Gene detail

Detail information of GWHGAAZE023091

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI38166.3	7.58892E-69	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	8E-60	Serine/threonine-protein kinase PBS1
trEMBL	tr\|F6I1N7\|F6I1N7_VITVI	6E-69	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60854.1}
TAIR10	AT5G13160.1	1E-51	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	83293827	83298444	+
GWHAAZE00000006	mRNA	83293827	83298444	+
GWHAAZE00000006	exon	83293827	83293947	+
GWHAAZE00000006	exon	83294285	83294523	+
GWHAAZE00000006	exon	83295338	83295436	+
GWHAAZE00000006	exon	83298010	83298444	+
GWHAAZE00000006	CDS	83293827	83293947	+
GWHAAZE00000006	CDS	83294285	83294523	+
GWHAAZE00000006	CDS	83295338	83295436	+
GWHAAZE00000006	CDS	83298010	83298444	+

Transcript Sequence
>GWHTAAZE023121 ATGGGTTGTTTTCCATGTTTTGATTCAAGAGAAGCAGAAAAGCTTAACCACCAGATAGGGAGAGATGATCGCAAGGATAGTCACCAAACCGCTCCCACCAATATTTCCAGATTATCCTCTGATCTGTACATGGTTATGGTTCCTGCACATGCAGGAGGAGATAGAATCAAAACAAGGAGTAACGCTGGGTTAAGGAAGGAATCAGTGGGGTCGAAGGATGCTCCTGATGTTCAGATTGCTGCCCAAACATTTACTTTTCGAGAACTTGCTGCTGCAACTAACAATTTCAGGCCCGAGTCCTTCATTGGGGAAGGTGGATTCGGGCGTGTATACAAAGGCCGGCTTCAGAGTACTGGTCAAGTTGTAGCAGTTAAACAATTGGACAGAGATGGGCTACAGGGTAACAGGGAATTTCTGGTGGAAGTTCTCATGCTCAGCCTTCTACATCATCCTAACCTTGCTCGACCATTGTTCAATGATAGGAGGAAATTTGCAAAATTGGCGGACCCACGGCTACAAGGTCAGTATCCAATGAGGGGTCTGTACCAGGCTCTAGCAGTGGCATCAATGTGTATACAAGAACAGGCTGCAGCTCGTCCTCTAATAGGTGATGTGGTTACCGCCCTATCGTATCTGGCAAACCAGGCATATGATTCTAGCAACAGACCACCTGGGAATAAGGATGAGAGAATATCAAGGAATGAAGATGGGGGAGGATCCGGGCGTAAATGGGACCTGGAAGGACTTGACAGAGATGACTCACCTAAAGAAACTGCAAGAATGTTAAATAGGGGATTGGAAAGAGAAAGAGCTGTTGCTGAGGCCAAAATGTGGGGGGAGAAAAAAAGACGGCAAGGTGGTGCTCAAGGCAGCTTTGATGGCAACATCGGCTAG

Network for GWHGAAZE023091

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	99	213	4.90E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
K13430	PBS1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.199
	SRR3591706	second leaf	18.376
	SRR3591707	mature leaf	26.870
	SRR3591708	Shoot apex	14.329
	SRR3591709	Stem	50.270
	SRR3591710	White floral bud	45.097
	SRR3591711	White flower	80.738
	SRR3591712	Green floral bud	30.939
	SRR3591713	Yellow flower	102.767
SRP173429	SRR8316895	Juvenile bud stage	16.853
	SRR8316896	Juvenile bud stage	20.521
	SRR8316897	Juvenile bud stage	11.024
	SRR8316894	Third green stage	9.423
	SRR8316900	Third green stage	27.820
	SRR8316901	Third green stage	28.742
	SRR8316898	Complete white stage	25.365
	SRR8316899	Complete white stage	53.141
	SRR8316903	Complete white stage	32.807
	SRR8316902	Silver flowering stage	31.090
	SRR8316904	Silver flowering stage	35.908
	SRR8316905	Silver flowering stage	19.609
	SRR8316906	Gold flowering stage	66.152
	SRR8316907	Gold flowering stage	66.566
	SRR8316908	Gold flowering stage	70.604
SRP132670	SRR6706286	Control	42.880
	SRR6706287	Light intensity 50%	39.365
	SRR6706288	Light intensity 20%	39.988
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.081
	CNS0095593	Slightly white alabastrum(diploid) 2	19.537
	CNS0095594	Slightly white alabastrum(diploid) 3	18.946
	CNS0095595	Whole white alabastrum(diploid) 2	17.980
	CNS0095596	Whole white alabastrum(diploid) 3	13.663
	CNS0095597	Whole white alabastrum(diploid) 4	15.319
	CNS0095598	Silvery flower (diploied) 1	30.541
	CNS0095599	Silvery flower (diploied) 2	24.881
	CNS0095600	Silvery flower (diploied) 3	63.656
	CNS0095601	Golden flower (diploid) 1	32.363
	CNS0095602	Golden flower (diploid) 2	65.862
	CNS0095603	Golden flower (diploid) 3	66.518
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.028
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.831
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.931
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.089
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.991
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.656
	CNS0095610	Silvery flower (tetraploid) 1	73.411
	CNS0095611	Silvery flower (tetraploid) 2	70.344
	CNS0095612	Silvery flower (tetraploid) 3	59.584
	CNS0095613	Golden flower (tetraploid) 1	60.926
	CNS0095614	Golden flower (tetraploid) 2	73.922
	CNS0095615	Golden flower (tetraploid) 3	77.224
CRA001975	CRR073297	Stem 1	19.997
	CRR073298	Stem 2	21.283
	CRR073299	Stem 3	16.936
	CRR073300	Leaf 1	26.910
	CRR073301	Leaf 2	28.424
	CRR073302	Leaf 3	19.363
	CRR073303	Juvenile bud 1	30.953
	CRR073304	Juvenile bud 2	30.532
	CRR073305	Juvenile bud 3	38.938
	CRR073306	Third green 1	40.958
	CRR073307	Third green 2	35.756
	CRR073308	Third green 3	34.103
	CRR073309	Second white 1	36.705
	CRR073310	Second white 2	33.851
	CRR073311	Second white 3	35.047
	CRR073312	Silver flowering 1	44.415
	CRR073313	Silver flowering 2	46.584
	CRR073314	Silver flowering 3	52.899
	CRR073315	Gold flowering 1	10.580
	CRR073316	Gold flowering 2	15.222
	CRR073317	Gold flowering 3	13.875
	CRR073318	Tawny withering 1	28.833
	CRR073319	Tawny withering 2	34.802
	CRR073320	Tawny withering 3	32.225