Gene detail

Detail information of GWHGAAZE023116

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008222244.1	4.2709E-174	PREDICTED: ubiquitin thioesterase otubain-like [Prunus mume]
Swissprot	tr\|Q8LG98\|OTUBL_ARATH	7E-148	Ubiquitin thioesterase otubain-like
trEMBL	tr\|M5XZ09\|M5XZ09_PRUPE	1E-172	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24495.1}
TAIR10	AT1G28120.1	9E-119	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	83855278	83859559	-
GWHAAZE00000006	mRNA	83855278	83859559	-
GWHAAZE00000006	exon	83859409	83859559	-
GWHAAZE00000006	exon	83859134	83859196	-
GWHAAZE00000006	exon	83859010	83859059	-
GWHAAZE00000006	exon	83858342	83858407	-
GWHAAZE00000006	exon	83858170	83858253	-
GWHAAZE00000006	exon	83857923	83858045	-
GWHAAZE00000006	exon	83856185	83856237	-
GWHAAZE00000006	exon	83856009	83856058	-
GWHAAZE00000006	exon	83855798	83855898	-
GWHAAZE00000006	exon	83855278	83855553	-
GWHAAZE00000006	CDS	83859409	83859559	-
GWHAAZE00000006	CDS	83859134	83859196	-
GWHAAZE00000006	CDS	83859010	83859059	-
GWHAAZE00000006	CDS	83858342	83858407	-
GWHAAZE00000006	CDS	83858170	83858253	-
GWHAAZE00000006	CDS	83857923	83858045	-
GWHAAZE00000006	CDS	83856185	83856237	-
GWHAAZE00000006	CDS	83856009	83856058	-
GWHAAZE00000006	CDS	83855798	83855898	-
GWHAAZE00000006	CDS	83855278	83855553	-

Transcript Sequence
>GWHTAAZE023146 ATGCAGAATCAGGATGAGCTTCCAATGGATGCAGAAATCGAGTCCCTGAAAGCATCTGAGGTTGATGATTGGGAAAATATCAAGGACAATGATATTATGCAACAGCAATCTGCAATCTGGGCCGAGGAAGCTAAGAAGTTTCCTTTCGTAGCAAGAATCCAAACACAGGCATATAATAGGAGTGAAATAGAATTAGGAAAGCGTGGACCAACTGCGCAATTACTGAAGCCTCAAATTAAGATTTTCACTTGCATAGCATTAAAGGAACCTCTCTCATCATTGGCAGCTGAATATCAGTCCGGAAGCCCTATTTTGCTTGAGAAAATAAAGATACTGAGTGACCAATATGCTGCCATCAGGCGAACTCGGGGAGATGGAAACTGCTTCTTTCGAGGCTTTATGTTCTCTTATCTTGAGCATATTCTGGAATCGCAAGACCAAGCTGAGGTTGATCGCATCAAAGCCAATGTCGAGCAATGCAGGAAGACACTACAGAGTCTGGGTTATGCAGACTTTACTTTTGAAGATTTTTTTGCGTTATTTCTTGAGCAGCTGGACGGTGTTCTTCAAGGGAATGAAGCTTCTATAAGTCATGCTAAACTTGTACAGGAAAGTCGAGATCAGTCAGTGTCTGATTATGTTGTAATGTTCTTCAGATTTGTGACCTCTGGAGAAATACGAAAGCGCGCAGAGTTTTTTGAACCATTTATACTGGGACTAACAAATGCAACAGTAGAACAGTTTTGCAAGTCCTCGGTGGAACCCATGGGTGAAGAGAGTGACCATGTGCACATTACAGCCCTGTCAGATGCACTGGGGGTACCAATTCGTGTAGTATATCTTGATCGCAGCTCATGTGATAGTGGTGGTGTCAGTGTGAATCATCATGATTTCATTCCTGCTTTTGGTGGTGATGTCCCAAACGCTCCTCCTGGTGATAGCTCCGAGATTATTATCAAGCCGTTCATTACCTTGCTCTACAGGCCAGGACACTATGACATTCTTTACCCCAAATGA

Network for GWHGAAZE023116

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10275.10	Peptidase_C65	85	337	4.50E-85

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	77.807
	SRR3591706	second leaf	42.641
	SRR3591707	mature leaf	32.275
	SRR3591708	Shoot apex	65.741
	SRR3591709	Stem	73.578
	SRR3591710	White floral bud	82.798
	SRR3591711	White flower	87.203
	SRR3591712	Green floral bud	62.154
	SRR3591713	Yellow flower	91.562
SRP173429	SRR8316895	Juvenile bud stage	40.856
	SRR8316896	Juvenile bud stage	51.983
	SRR8316897	Juvenile bud stage	25.291
	SRR8316894	Third green stage	21.374
	SRR8316900	Third green stage	56.788
	SRR8316901	Third green stage	55.616
	SRR8316898	Complete white stage	35.868
	SRR8316899	Complete white stage	79.129
	SRR8316903	Complete white stage	51.543
	SRR8316902	Silver flowering stage	36.852
	SRR8316904	Silver flowering stage	47.491
	SRR8316905	Silver flowering stage	22.496
	SRR8316906	Gold flowering stage	68.130
	SRR8316907	Gold flowering stage	68.353
	SRR8316908	Gold flowering stage	71.943
SRP132670	SRR6706286	Control	44.940
	SRR6706287	Light intensity 50%	51.338
	SRR6706288	Light intensity 20%	53.654
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.315
	CNS0095593	Slightly white alabastrum(diploid) 2	44.859
	CNS0095594	Slightly white alabastrum(diploid) 3	41.344
	CNS0095595	Whole white alabastrum(diploid) 2	44.838
	CNS0095596	Whole white alabastrum(diploid) 3	38.525
	CNS0095597	Whole white alabastrum(diploid) 4	38.871
	CNS0095598	Silvery flower (diploied) 1	57.284
	CNS0095599	Silvery flower (diploied) 2	42.195
	CNS0095600	Silvery flower (diploied) 3	60.929
	CNS0095601	Golden flower (diploid) 1	47.516
	CNS0095602	Golden flower (diploid) 2	49.221
	CNS0095603	Golden flower (diploid) 3	50.160
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.985
	CNS0095606	Slightly white alabastrum(tetraploid) 3	67.890
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.668
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.965
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.413
	CNS0095610	Silvery flower (tetraploid) 1	84.796
	CNS0095611	Silvery flower (tetraploid) 2	73.464
	CNS0095612	Silvery flower (tetraploid) 3	86.363
	CNS0095613	Golden flower (tetraploid) 1	66.952
	CNS0095614	Golden flower (tetraploid) 2	74.475
	CNS0095615	Golden flower (tetraploid) 3	80.636
CRA001975	CRR073297	Stem 1	48.824
	CRR073298	Stem 2	46.571
	CRR073299	Stem 3	41.608
	CRR073300	Leaf 1	53.346
	CRR073301	Leaf 2	49.581
	CRR073302	Leaf 3	44.618
	CRR073303	Juvenile bud 1	42.207
	CRR073304	Juvenile bud 2	36.753
	CRR073305	Juvenile bud 3	45.920
	CRR073306	Third green 1	24.158
	CRR073307	Third green 2	28.002
	CRR073308	Third green 3	26.995
	CRR073309	Second white 1	35.461
	CRR073310	Second white 2	34.075
	CRR073311	Second white 3	36.163
	CRR073312	Silver flowering 1	30.378
	CRR073313	Silver flowering 2	21.979
	CRR073314	Silver flowering 3	25.340
	CRR073315	Gold flowering 1	32.852
	CRR073316	Gold flowering 2	30.537
	CRR073317	Gold flowering 3	17.721
	CRR073318	Tawny withering 1	38.836
	CRR073319	Tawny withering 2	39.722
	CRR073320	Tawny withering 3	40.317