Gene detail

Detail information of GWHGAAZE023133

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283468.1	5.9772E-157	PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera]
Swissprot	tr\|Q9LRB5\|LHT2_ARATH	0.00000001	Lysine histidine transporter 2
trEMBL	tr\|D7SXA8\|D7SXA8_VITVI	2E-157	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22205.3}
TAIR10	AT3G28960.1	2E-96	Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	139009	141449	-
GWHAAZE00000007	mRNA	139009	141449	-
GWHAAZE00000007	exon	139009	139392	-
GWHAAZE00000007	exon	139839	140040	-
GWHAAZE00000007	exon	140118	140445	-
GWHAAZE00000007	exon	141278	141449	-
GWHAAZE00000007	CDS	141278	141449	-
GWHAAZE00000007	CDS	140118	140445	-
GWHAAZE00000007	CDS	139839	140040	-
GWHAAZE00000007	CDS	139009	139392	-

Transcript Sequence
>GWHTAAZE023163 ATGGAGGCTGAAGCACAAGAAGGGTACTCTGTTACAATACCCCTTTTGCTGGGGATTGATGAGAAGCAACCCCACAAGAATGTAAGTGATGAGTCTGCAGTTGAATCCTATTACACTGCTGGCACTACCTCTTTCTTCAAGACTTGTTTCAATGGCCTCAATGCTCTCTCAGGAGTTGGGATACTATCAATCCCATATGCACTATCATCAGGAGGATGGTTGAGTTTAATACTTCTTCTCATCATCGCGTTCTCCACCTTCTACACGGGCTTGTTAATCAAACGATGTATGGATGAAGATCCAGACATAAGAAGCTATCCTGACATTGGAGACCGTGCATTTGGTACAAAAGGAAGAATTGCAGTATCCATTATTATGAACATGGAACTCTACTTAGTTGCAATCGGTTTCCTTATTCTTGAAGGGATAATTTGCATAACATACTACCGGACATTGGATTCCAAGTTTTTGGGCTCTCAGTTAGCGGAACACAAAGCTTTTGGAGTTGTAGCTTCTGTTATTATCCTTGGCTCAATTTTGTGGGCTGGTGTATTTGATGGCATTGGATTTAAGGAAAAGGGTGATCTTGTAAATTGGAGTGGAGTGCCCACCGCTGTTAGCTTATACGCCTTTTGCTATTGTGCACATCCAGTTTTCCCTACCCTGTACACTTCTATGAGGAACCAACGACAGTTCACAAAGGTCTTGAGCGTATGCTTTGGATTTTGTACTCTTACTTACGCATCAATGGCGGTTTTGGGTTACCTCATGTTTGGTTCAAATCTGCAAGAGCAAATAACCTTAAATCTTCCAACCAAAAACATAAGCTCAAAAGTGGCCATATGCACTACTCTGGTCAACCCAATATCTAAATATGCGCTGATGGTAACACCGATTGTCAATACCATCGAAAATTGGTTTCGGTCTTATTGCAACAAGAGGCCGTTTAGCCTAATGATTAGAACATCCTTGGTGATCAGCACCGTCATTTTTGCTCTCGCCTTCCCTTTTTTGGATCTCATGTCCCTTGTTGGAGCAGTTCTAAGCGTGACAGCTTCGATTATACTTCGTGCTTGTGCTACTTGA

Network for GWHGAAZE023133

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.19	Aa_trans	42	152	3.00E-20
PF01490.19	Aa_trans	184	356	6.10E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15015	SLC32A, VGAT	GABAergic synapse	map04727
		Retrograde endocannabinoid signaling	map04723
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.206
	SRR3591706	second leaf	0.640
	SRR3591707	mature leaf	0.360
	SRR3591708	Shoot apex	0.758
	SRR3591709	Stem	0.180
	SRR3591710	White floral bud	3.484
	SRR3591711	White flower	2.510
	SRR3591712	Green floral bud	3.605
	SRR3591713	Yellow flower	2.852
SRP173429	SRR8316895	Juvenile bud stage	3.234
	SRR8316896	Juvenile bud stage	0.942
	SRR8316897	Juvenile bud stage	3.074
	SRR8316894	Third green stage	0.300
	SRR8316900	Third green stage	4.327
	SRR8316901	Third green stage	3.892
	SRR8316898	Complete white stage	3.434
	SRR8316899	Complete white stage	30.409
	SRR8316903	Complete white stage	6.003
	SRR8316902	Silver flowering stage	22.384
	SRR8316904	Silver flowering stage	39.067
	SRR8316905	Silver flowering stage	19.773
	SRR8316906	Gold flowering stage	77.599
	SRR8316907	Gold flowering stage	65.058
	SRR8316908	Gold flowering stage	72.727
SRP132670	SRR6706286	Control	0.359
	SRR6706287	Light intensity 50%	0.367
	SRR6706288	Light intensity 20%	0.651
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.186
	CNS0095593	Slightly white alabastrum(diploid) 2	3.929
	CNS0095594	Slightly white alabastrum(diploid) 3	7.173
	CNS0095595	Whole white alabastrum(diploid) 2	3.793
	CNS0095596	Whole white alabastrum(diploid) 3	3.900
	CNS0095597	Whole white alabastrum(diploid) 4	2.428
	CNS0095598	Silvery flower (diploied) 1	5.508
	CNS0095599	Silvery flower (diploied) 2	13.716
	CNS0095600	Silvery flower (diploied) 3	13.896
	CNS0095601	Golden flower (diploid) 1	9.685
	CNS0095602	Golden flower (diploid) 2	16.861
	CNS0095603	Golden flower (diploid) 3	15.363
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.954
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.483
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.358
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.461
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.723
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.081
	CNS0095610	Silvery flower (tetraploid) 1	1.925
	CNS0095611	Silvery flower (tetraploid) 2	1.929
	CNS0095612	Silvery flower (tetraploid) 3	27.013
	CNS0095613	Golden flower (tetraploid) 1	5.325
	CNS0095614	Golden flower (tetraploid) 2	2.913
	CNS0095615	Golden flower (tetraploid) 3	9.095
CRA001975	CRR073297	Stem 1	3.132
	CRR073298	Stem 2	2.447
	CRR073299	Stem 3	2.918
	CRR073300	Leaf 1	0.284
	CRR073301	Leaf 2	0.698
	CRR073302	Leaf 3	2.114
	CRR073303	Juvenile bud 1	0.777
	CRR073304	Juvenile bud 2	3.771
	CRR073305	Juvenile bud 3	0.351
	CRR073306	Third green 1	104.863
	CRR073307	Third green 2	74.751
	CRR073308	Third green 3	72.852
	CRR073309	Second white 1	257.596
	CRR073310	Second white 2	176.187
	CRR073311	Second white 3	171.011
	CRR073312	Silver flowering 1	138.258
	CRR073313	Silver flowering 2	176.805
	CRR073314	Silver flowering 3	140.381
	CRR073315	Gold flowering 1	0.240
	CRR073316	Gold flowering 2	6.865
	CRR073317	Gold flowering 3	7.520
	CRR073318	Tawny withering 1	3.577
	CRR073319	Tawny withering 2	28.135
	CRR073320	Tawny withering 3	1.407