Gene detail

Detail information of GWHGAAZE023137

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP19885.1	0	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	1E-25	hypothetical protein Aasi_1443
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	0	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068VGC2\|A0A068VGC2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_763 {ECO:0000313\|EMBL:CDP19885.1}
TAIR10	AT3G51550.1	0	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	225293	235448	-
GWHAAZE00000007	mRNA	225293	235448	-
GWHAAZE00000007	exon	235133	235448	-
GWHAAZE00000007	exon	234333	234596	-
GWHAAZE00000007	exon	225293	227724	-
GWHAAZE00000007	CDS	235133	235448	-
GWHAAZE00000007	CDS	234333	234596	-
GWHAAZE00000007	CDS	225293	227724	-

Transcript Sequence
>GWHTAAZE023167 ATGAGACACAATTATAATTTGCTAGCCAAATTCATCATTTTGGCCGGAGTTCTCGCAGGAGCCTTGCCAGAGTTGGTTCTCAGTCAAGGTCAATGCGGATGCGCCTCAACCGCCTGCTGTAGCCAATTTGGATATTGCGGGCAAGGTAGGGAATATTGTGGAACAGGGTGTCAAAGTGGCCCTTGTGACCCGCCCGACAATGTGTCGGTCTCAAGTATTGTGACTGATGCATTTTTCAGCGGGATTGTTAATCAATCTGCTGTGAGTTGTGTTGGAAGGGGATTTTACAGTAGATCGGCGTTTCTTGAGGCCATTGGTTTTTGCTTCATAGAGGACAAGGACGGTCCTGATAACTGTGACGATAAGAATACAACGTATCCATGTGCACCCAATAAGAGCTACTACGGTCGAGGTCCACTTCAGCTCGCATGGAACTACAATTACGGACCAGCTGGAGAGAGCAACAGTTTTGACGGACTAAACAACCCCGAAATCGTGGCCACCAATGCCGTTATTTCCTTCAGAGCCGCCTTGTGGTATTGGATGAGATACGTTCACTCTATCATGGCTTCTGGACAAGCCAATGGCACCGCTATTGATGGACCTTATAGTCCCACCGATCATATTTTATGGGATTGTGGCTCAAAGTTCGAAAAAATTTCAGTAGATGGCCGAGAGTGGGCTGGGGATGCCTCGTCAGTATTCACACAGTCGAGCACGAACACAAGCATATCGTTTGCATCAAATGCCTTGGAAAAATATCCTTCTGTCACCCAAGTCCCTTACATGACAGCCCGTATCTTTAGGGGATCTCCCATCACCTACAATTTCAATCTATCCGCCGGCCCAAAATTCGTCCGTCTTTACTTCTACCCGGCTACCTACTCTGGCTTGGACAAGTCAAAATCCTTATTTTCCGTAGAGTCCGGTGGCTACACTCTCCTCAGAAACTTCAGTGCTTTTCTTACCATAGCTGTTTTAGAACCTCTAGTGCCCTTTTTTGTCAAAGAATTCATCCTCCACGTTAATGAAGACATACTCAACCTAACATTTTCAGCCATGTCCCCTGAATCTTTTGGTTTTGTCAATGGCATCGAGATAGTTTCCATGCCAGAGAATCTTTATATTCTCGGTAATAGTAATCCCATACCACTCATTAGCCAGAACACTGATTATTTTATTTCTAGTGACACAGCCCTCGAAACTCTTTACAGGTTAAACATTGGGGGGAATAACGTTCCTGTAGCGTTGGATACTGGTATGTTTCGCTCTTGGTTTAATGATGATGACTATATAAAAAGCGAGGATCTTGGGTATAAGCTTGAGGGAGTTTTCTCGGTCAATTATACATCGGACACACCGCCTTACACTGCACCAGAGATTGTCTACAATACCTCAAGAACTTCAATTCACAACCTGACTTGGCATTTTACTGTTGATGCTGGGTTCAATTATCTCCTCAGACTCCATTTCTGTGAGTCTCAGTTGGAGGTAACACGTATAAATCAACGGGTCTTTTCAATATTCATCAACGATCAAATAGCAGAGAAAGATGCTGATGTAATGGCGTGGACTGGTGGAAATGGAATTCCTATGTTCAAGGACTATATAGTGTTGGTTCCAAATCCATTAAATGGCATGAGTAAGCAGAAGTTGTCGCTCACCATGGATCTTTATTCCCTCAAACACGCTCCCAACTTGAGTGATGTTATCTTGAACGGCTTAGAGATCTTCAAGTTGAGTGGATCCGACAATAGTCTTGCTGGCCGTAATCCTGAAGTATATCTTACACCACCGTCAAAAAGAAAACGAAAGACTAAATGTTTATTAAAGTTTGGGGTAATTCTCGTTGGAGGAATATCAGCACTATCAATTTTGAGTTACTTGGTTTTTCGGCGATGGCGGAAAGCTAGTTTAACCGATACCAAGTTGGACCCAATCGGGCCCACGAAGTTAAGCGCTTCATTCCTACCATCAAATATTCGGCACTTTTCACTTGCTGAAATCAAATCTAGTACTAGCAACTTTGATGAAAATCTTGTCATCGGCGTTGGAGGATTTGGCAACGTTTATAAAGGCTACATAGACAACGGTGCAATAACCGTTGCGATCAAGCGGTTGAATGCTTCGTCTCATCAAGGTATTCGTGAGTTCGAAACAGAGATTGAAATGCTATCCAAACTACGACATCTTCATCTTGTGTCCCTAATTGGATACTGCAAAGATAATGGGGAAATGGTATTGGTGTATGATTATATGGCTAACGGTACGTTACGATCCCATTTTTGCAAGCCGAATAATCCTTTATCATGGAAGCATCGCCTTCAAATATGTATCGGATCTGCTAGGGGACTACAATATCTTCATACAAGTTCGAAGCATAGAATTATTCACCGTGACGTGAAGTCCACAAACATTTTGCTAGACGAAAGATGGGTAGCAAAAGTCTCCGATTTTGGTTTGTCCAAGATGGGACCCACTGGTGTGTCTCACACCCATGTGAGCACCATGGTTAAAGGTAGTTTCGGGTACATGGACCCGGAGTACTACCGGCTACAAAGATTGACAGATAAGTCTGACGTGTACTCGTTTGGGGTGGTTTTATTCGAAGTGTTATCCGGTAAGCCAGCAATTATTGAAGACATACCTGAGGAGCCGGTGAATTTGGCCGAGTGGGCTCGATGTTGTTATAAAACGGGGGCCCTTGATGAAATTATTGATCTTCATGTAGTGGACGAGATTGCACCAGAATGTTTAAAGAACTTTGCCGATGTAGATTATAATTGTGTCCAAGAACAAGGGATCAATAGACCATCAATGAGTGACGTGGTTTGGAGTTTGGAGCTTGCATTACAACTTCAAGAGGCTGCTGAGAATATGAGTGGTAATGGAGCTGCACTTGAGACCTTAGAAAATTTCATGAATTTACCTTTCCATCTTAGAGAGGATGCCTTAACAGAGCATAATGAGAGCTTGTCTGGGTCGATTGAATTAGCAGGCAGCTCTGGAAGT

Network for GWHGAAZE023137

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0208

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00182.20	Glyco_hydro_19	103	183	1.20E-24
PF12819.8	Malectin_like	212	579	9.70E-37
PF07714.18	PK_Tyr_Ser-Thr	681	945	2.50E-47

Protein Sequence

>GWHPAAZE023153
MRHNYNLLAKFIILAGVLAGALPELVLSQGQCGCASTACCSQFGYCGQGREYCGTGCQSGPCDPPDNVSVSSIVTDAFFSGIVNQSAVSCVGRGFYSRSAFLEAIGFCFIEDKDGPDNCDDKNTTYPCAPNKSYYGRGPLQLAWNYNYGPAGESNSFDGLNNPEIVATNAVISFRAALWYWMRYVHSIMASGQANGTAIDGPYSPTDHILWDCGSKFEKISVDGREWAGDASSVFTQSSTNTSISFASNALEKYPSVTQVPYMTARIFRGSPITYNFNLSAGPKFVRLYFYPATYSGLDKSKSLFSVESGGYTLLRNFSAFLTIAVLEPLVPFFVKEFILHVNEDILNLTFSAMSPESFGFVNGIEIVSMPENLYILGNSNPIPLISQNTDYFISSDTALETLYRLNIGGNNVPVALDTGMFRSWFNDDDYIKSEDLGYKLEGVFSVNYTSDTPPYTAPEIVYNTSRTSIHNLTWHFTVDAGFNYLLRLHFCESQLEVTRINQRVFSIFINDQIAEKDADVMAWTGGNGIPMFKDYIVLVPNPLNGMSKQKLSLTMDLYSLKHAPNLSDVILNGLEIFKLSGSDNSLAGRNPEVYLTPPSKRKRKTKCLLKFGVILVGGISALSILSYLVFRRWRKASLTDTKLDPIGPTKLSASFLPSNIRHFSLAEIKSSTSNFDENLVIGVGGFGNVYKGYIDNGAITVAIKRLNASSHQGIREFETEIEMLSKLRHLHLVSLIGYCKDNGEMVLVYDYMANGTLRSHFCKPNNPLSWKHRLQICIGSARGLQYLHTSSKHRIIHRDVKSTNILLDERWVAKVSDFGLSKMGPTGVSHTHVSTMVKGSFGYMDPEYYRLQRLTDKSDVYSFGVVLFEVLSGKPAIIEDIPEEPVNLAEWARCCYKTGALDEIIDLHVVDEIAPECLKNFADVDYNCVQEQGINRPSMSDVVWSLELALQLQEAAENMSGNGAALETLENFMNLPFHLREDALTEHNESLSGSIELAGSSGS

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0008061	molecular_function	chitin binding
GO:0004568	molecular_function	chitinase activity
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.023
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.010
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.035
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.006
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.030
	SRR8316903	Complete white stage	0.015
	SRR8316902	Silver flowering stage	0.005
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.001
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.002
SRP132670	SRR6706286	Control	0.029
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.006
	CNS0095595	Whole white alabastrum(diploid) 2	0.002
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.013
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.042
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.004
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.033
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.001
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.139
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.005
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.001
	CNS0095612	Silvery flower (tetraploid) 3	0.002
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.006
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.003
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.006
	CRR073304	Juvenile bud 2	0.001
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.018
	CRR073307	Third green 2	0.005
	CRR073308	Third green 3	0.005
	CRR073309	Second white 1	0.006
	CRR073310	Second white 2	0.011
	CRR073311	Second white 3	0.009
	CRR073312	Silver flowering 1	0.005
	CRR073313	Silver flowering 2	0.008
	CRR073314	Silver flowering 3	0.003
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000