Gene detail

Detail information of GWHGAAZE023152

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN75612.1	1.6081E-42	hypothetical protein VITISV_022290 [Vitis vinifera]
trEMBL	tr\|A5AFS9\|A5AFS9_VITVI	6E-43	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN75612.1}
TAIR10	AT5G38720.1	1E-26	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	689312	691525	+
GWHAAZE00000007	mRNA	689312	691525	+
GWHAAZE00000007	exon	689312	689443	+
GWHAAZE00000007	exon	689925	690096	+
GWHAAZE00000007	exon	690182	690229	+
GWHAAZE00000007	exon	690574	690711	+
GWHAAZE00000007	exon	691067	691164	+
GWHAAZE00000007	exon	691364	691525	+
GWHAAZE00000007	CDS	689312	689443	+
GWHAAZE00000007	CDS	689925	690096	+
GWHAAZE00000007	CDS	690182	690229	+
GWHAAZE00000007	CDS	690574	690711	+
GWHAAZE00000007	CDS	691067	691164	+
GWHAAZE00000007	CDS	691364	691525	+

Transcript Sequence
>GWHTAAZE023182 ATGGGAACCAATGGTTCGCGGAAGAAACTGAAGACTTCAGCTGTTGAGGGATTAGCTATGCCACTCAGGCTTAAGAAAAAGAAGAAGAGCAAAGAGGAATACTCTAAAAGAATTCCAACATTGTCGAAAGTGTGTGACTTTTGGCCTTCAGCAGATGAGGCAATTGGTGAGAAGAAAAAGAGCAAATTGAAGAACAAGAAAAGAAAAATGGACAAGATAATTGATTCTGAAATTGGTGAAGCTGATGAGACATTTAATAAAATGGAAGAGAAAGAAATGGAAGGCTGCTGTGATGAACAAACTGTTGATAAGGTCGATAATGAAGTTGAAAATGGATCTAGCCAACAGAAAGGCAAGTCAAAAAAGTCTCGTAAAATGAAAAGGAAGAACCCGATGCTATCTAAGAATGATGAGGAAAAGACAGAAGTTCAACAAGATGAGGTTTATGAGATATCTTCAGGAGACGAGGACTGCACTACAGGAATGAAAAAATGGATAATGGAGTACCATCAAAGTAGACCAGGGTTAGATATACTTCAGCGAAGAATCGATGACTTCATAACTGCTCATGAGGAACAAGAGGAGCAGGCAAGAAAAGAAAGAGAAGCTCTTATTGCAGAAGATGGATGGACGGTGGTTGTACATCACAAGGGAAGGAAAAGACGACAGATTCAAACTGGAGTTACTGTGGGTTCTGTTGCCCGGCTGCCGTTATGGATAAGCTGTCCAAAAAGAAAAGTAAAGATGTAG

Network for GWHGAAZE023152

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12923.8	RRP7	171	221	2.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14545	RRP7	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.945
	SRR3591706	second leaf	7.248
	SRR3591707	mature leaf	6.900
	SRR3591708	Shoot apex	13.376
	SRR3591709	Stem	9.067
	SRR3591710	White floral bud	15.674
	SRR3591711	White flower	13.061
	SRR3591712	Green floral bud	12.798
	SRR3591713	Yellow flower	11.009
SRP173429	SRR8316895	Juvenile bud stage	5.260
	SRR8316896	Juvenile bud stage	7.594
	SRR8316897	Juvenile bud stage	6.223
	SRR8316894	Third green stage	2.968
	SRR8316900	Third green stage	7.873
	SRR8316901	Third green stage	8.472
	SRR8316898	Complete white stage	2.791
	SRR8316899	Complete white stage	9.656
	SRR8316903	Complete white stage	5.169
	SRR8316902	Silver flowering stage	2.631
	SRR8316904	Silver flowering stage	4.248
	SRR8316905	Silver flowering stage	2.322
	SRR8316906	Gold flowering stage	4.559
	SRR8316907	Gold flowering stage	6.720
	SRR8316908	Gold flowering stage	14.013
SRP132670	SRR6706286	Control	4.012
	SRR6706287	Light intensity 50%	3.207
	SRR6706288	Light intensity 20%	3.515
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.094
	CNS0095593	Slightly white alabastrum(diploid) 2	14.132
	CNS0095594	Slightly white alabastrum(diploid) 3	19.009
	CNS0095595	Whole white alabastrum(diploid) 2	12.255
	CNS0095596	Whole white alabastrum(diploid) 3	9.798
	CNS0095597	Whole white alabastrum(diploid) 4	11.490
	CNS0095598	Silvery flower (diploied) 1	10.078
	CNS0095599	Silvery flower (diploied) 2	10.281
	CNS0095600	Silvery flower (diploied) 3	4.717
	CNS0095601	Golden flower (diploid) 1	10.056
	CNS0095602	Golden flower (diploid) 2	5.815
	CNS0095603	Golden flower (diploid) 3	3.406
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.831
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.538
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.653
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.662
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.463
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.062
	CNS0095610	Silvery flower (tetraploid) 1	14.074
	CNS0095611	Silvery flower (tetraploid) 2	10.298
	CNS0095612	Silvery flower (tetraploid) 3	9.146
	CNS0095613	Golden flower (tetraploid) 1	13.223
	CNS0095614	Golden flower (tetraploid) 2	12.301
	CNS0095615	Golden flower (tetraploid) 3	6.106
CRA001975	CRR073297	Stem 1	9.928
	CRR073298	Stem 2	8.231
	CRR073299	Stem 3	4.780
	CRR073300	Leaf 1	8.630
	CRR073301	Leaf 2	7.792
	CRR073302	Leaf 3	3.881
	CRR073303	Juvenile bud 1	6.658
	CRR073304	Juvenile bud 2	4.286
	CRR073305	Juvenile bud 3	3.155
	CRR073306	Third green 1	1.081
	CRR073307	Third green 2	1.154
	CRR073308	Third green 3	1.965
	CRR073309	Second white 1	0.607
	CRR073310	Second white 2	2.377
	CRR073311	Second white 3	1.917
	CRR073312	Silver flowering 1	1.734
	CRR073313	Silver flowering 2	0.653
	CRR073314	Silver flowering 3	1.291
	CRR073315	Gold flowering 1	1.979
	CRR073316	Gold flowering 2	2.523
	CRR073317	Gold flowering 3	0.569
	CRR073318	Tawny withering 1	5.193
	CRR073319	Tawny withering 2	8.494
	CRR073320	Tawny withering 3	6.425