Gene detail

Detail information of GWHGAAZE023153

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGT80621.1	8.9527E-160	S-adenosylmethionine decarboxylase [Camellia sinensis]
Swissprot	tr\|Q96471\|DCAM_IPONI	6E-167	S-adenosylmethionine decarboxylase beta chain (Precursor)
trEMBL	tr\|T1UPE7\|T1UPE7_CAMSI	3E-160	S-adenosylmethionine decarboxylase proenzyme {ECO:0000256\|PIRNR:PIRNR001355}
TAIR10	AT5G15950.2	5E-114	Adenosylmethionine decarboxylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	695189	696264	-
GWHAAZE00000007	mRNA	695189	696264	-
GWHAAZE00000007	exon	695189	695441	-
GWHAAZE00000007	exon	695528	696264	-
GWHAAZE00000007	CDS	695528	696264	-
GWHAAZE00000007	CDS	695189	695441	-

Transcript Sequence
>GWHTAAZE023183 ATGGCCCTACCTTCATCTGCAATCGGGTTTGAAGGCTACGAAAAAAGGCTTGAGATATCTTTTTCTGACCCTGGCATCTTTGCTGACCCTAAAGGCAGGGGCCTTCGATCTTTATCCAAATCCCAATTGGATGAAATGCTCAAACCAGCTGAATGCACCATTGTTGCTTCTCTGTCAAACGATGATTTGGATTCTTATGTCCTCTCGGAATCTAGCCTATTTGTGTTCCCTTACAAGATTATCATAAAAACTTGCGGGACTACAAAGCTGCTTCTCTCAATCCCACCGATACTCGAATTAGCCAATACCCTTTCCCTAAATGTGAAATCTGTAAGGTATACGTGGAAGTTTTATATTTCCGGTGCTCAGCCCTTCCCTCATCGTAACTTCTCTGAAGAAGTGGCTGTTCTTGATGGGTATTTTGGTAATCTTGGATTGGGCAGCAAGGCTTACGTAATGGGTGGTGTCGACAAATCAAAGCAATGGCATGTTTACTCTGCTTGTGTTGAATCGGAAAATTATACGAAACCTGTTTACACTCTTGAGCTGTGCATGACCGGCTTGGACAAAAATAGAGCATCTGTGTTTTATAAGACTGAATCAGGCTCAGCATCTACAATGACTCAATCATCCGGTATTAGGAAGATTCTCCCTGATTCCAAGATATGTGATTTCGAGTTTGATCCTTGTGGCTACTCAATGAATGCCATTGAGGGAGATCGATTTCTACTATCCACGGTTCTAGTTTGCTTTGAACCGGCAGAGTTTTCTGTGTCTTTGCATGTTGATGATGTGAGAGAGCAATTTGGTTCGAACATGACAGTTGGAGTGAAAGGTTATGGTTGTGAAGAAAAAAGCTATGAAGTGCTTGGCGAGGGAGGATCAATAATGTACTGCAGCTTCATCAGGGACCGTACATGTGGTTCTCCAAGGTCAACTCTGCATTGCTGCTGGAGTGAGAACGAGGACGAGGAAGTTGAGAAGGAATAA

Network for GWHGAAZE023153

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01536.17	SAM_decarbox	9	240	2.20E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01611	speD, AMD1	Metabolic pathways	map01100
		Cysteine and methionine metabolism	map00270
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0006597	biological_process	spermine biosynthetic process
GO:0008295	biological_process	spermidine biosynthetic process
GO:0004014	molecular_function	adenosylmethionine decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	244.486
	SRR3591706	second leaf	201.895
	SRR3591707	mature leaf	576.213
	SRR3591708	Shoot apex	141.010
	SRR3591709	Stem	411.091
	SRR3591710	White floral bud	999.514
	SRR3591711	White flower	989.904
	SRR3591712	Green floral bud	664.000
	SRR3591713	Yellow flower	820.045
SRP173429	SRR8316895	Juvenile bud stage	166.521
	SRR8316896	Juvenile bud stage	253.930
	SRR8316897	Juvenile bud stage	191.580
	SRR8316894	Third green stage	112.326
	SRR8316900	Third green stage	422.158
	SRR8316901	Third green stage	451.982
	SRR8316898	Complete white stage	465.321
	SRR8316899	Complete white stage	681.724
	SRR8316903	Complete white stage	557.803
	SRR8316902	Silver flowering stage	411.643
	SRR8316904	Silver flowering stage	542.950
	SRR8316905	Silver flowering stage	245.180
	SRR8316906	Gold flowering stage	596.718
	SRR8316907	Gold flowering stage	590.506
	SRR8316908	Gold flowering stage	895.367
SRP132670	SRR6706286	Control	210.356
	SRR6706287	Light intensity 50%	216.761
	SRR6706288	Light intensity 20%	224.858
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	244.863
	CNS0095593	Slightly white alabastrum(diploid) 2	273.337
	CNS0095594	Slightly white alabastrum(diploid) 3	283.433
	CNS0095595	Whole white alabastrum(diploid) 2	316.841
	CNS0095596	Whole white alabastrum(diploid) 3	336.611
	CNS0095597	Whole white alabastrum(diploid) 4	378.694
	CNS0095598	Silvery flower (diploied) 1	250.969
	CNS0095599	Silvery flower (diploied) 2	373.905
	CNS0095600	Silvery flower (diploied) 3	732.012
	CNS0095601	Golden flower (diploid) 1	301.520
	CNS0095602	Golden flower (diploid) 2	514.213
	CNS0095603	Golden flower (diploid) 3	495.811
	CNS0095604	Slightly white alabastrum(tetraploid) 1	425.471
	CNS0095605	Slightly white alabastrum(tetraploid) 2	451.647
	CNS0095606	Slightly white alabastrum(tetraploid) 3	362.515
	CNS0095607	Whole white alabastrum(tetraploid) 1	536.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	609.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	430.213
	CNS0095610	Silvery flower (tetraploid) 1	922.086
	CNS0095611	Silvery flower (tetraploid) 2	728.588
	CNS0095612	Silvery flower (tetraploid) 3	276.750
	CNS0095613	Golden flower (tetraploid) 1	505.332
	CNS0095614	Golden flower (tetraploid) 2	652.332
	CNS0095615	Golden flower (tetraploid) 3	1050.360
CRA001975	CRR073297	Stem 1	155.178
	CRR073298	Stem 2	157.246
	CRR073299	Stem 3	114.832
	CRR073300	Leaf 1	234.483
	CRR073301	Leaf 2	226.462
	CRR073302	Leaf 3	169.643
	CRR073303	Juvenile bud 1	262.345
	CRR073304	Juvenile bud 2	205.994
	CRR073305	Juvenile bud 3	312.291
	CRR073306	Third green 1	557.202
	CRR073307	Third green 2	504.261
	CRR073308	Third green 3	531.749
	CRR073309	Second white 1	282.925
	CRR073310	Second white 2	473.037
	CRR073311	Second white 3	441.011
	CRR073312	Silver flowering 1	571.699
	CRR073313	Silver flowering 2	479.852
	CRR073314	Silver flowering 3	508.471
	CRR073315	Gold flowering 1	61.021
	CRR073316	Gold flowering 2	44.127
	CRR073317	Gold flowering 3	26.748
	CRR073318	Tawny withering 1	88.373
	CRR073319	Tawny withering 2	104.103
	CRR073320	Tawny withering 3	95.026