Gene detail

Detail information of GWHGAAZE023159

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009594676.1	6.0614E-99	PREDICTED: uncharacterized protein LOC104091107 [Nicotiana tomentosiformis]
Swissprot	tr\|O04251\|Y4211_ARATH	5E-17	BRCT domain-containing protein At4g02110
trEMBL	tr\|M1CIT8\|M1CIT8_SOLTU	3E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400068307}
TAIR10	AT1G67180.1	9E-36	zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	860216	864872	+
GWHAAZE00000007	mRNA	860216	864872	+
GWHAAZE00000007	exon	860216	860249	+
GWHAAZE00000007	exon	860410	860558	+
GWHAAZE00000007	exon	861197	861330	+
GWHAAZE00000007	exon	862550	862712	+
GWHAAZE00000007	exon	863604	863750	+
GWHAAZE00000007	exon	864282	864872	+
GWHAAZE00000007	CDS	860216	860249	+
GWHAAZE00000007	CDS	860410	860558	+
GWHAAZE00000007	CDS	861197	861330	+
GWHAAZE00000007	CDS	862550	862712	+
GWHAAZE00000007	CDS	863604	863750	+
GWHAAZE00000007	CDS	864282	864872	+

Transcript Sequence
>GWHTAAZE023189 ATGGAAGAGGATTTGGTGCGACAGCAATCTGAAGAGTCCGTACATCGTACTGTCCCAGGCATGGAATCAGTAGTCGCTACCGTCAGTGGATACCATGGATCGGAGCGGTTCAAACTTATCAAAATTATATCTCAGGCCGGTGGGAGCTACGTCGGTCGACTGAATCAATCCACGACACATTTGGTTTGTTGGAAATTTGAAGGAAGGAAATATGAGCTTGCGAGAAAAATGAAGACGAAGATTGTTAATCATCGCTGGTTTGAAGATTGTATAGTGCAAGGAAGATTCCTACTGGAGCATCCTTATACCTTGATTTGTGGGAAAGAGGTGGGGCCGCTACGATTGGACATCCCAGTTGTTGCTAGTCCTTCGATTCCTGATCAATCGAATGCATGGAATGACTCTACAGAACCTGTAATTGATATTACAGGTGAAGACACTGACCATGCTGTTTGGGTTGATTCTAGAGTGTTAAAGGAGAATTTGTTTCCCGAGCTGGGAAGAAGCAAGAATAGATTTGACAAATCAAAGAGAAAGCAGATTAAGAAAAGTTTGATGCGTGATAACTCGTCTGGCACCAGATATTGCTCTGAAGAGCCTTCTTTATCTGGATCTAAAAGAGTGGAGATTGAAGAATTGTGTTCTCCTTCTCCTACACAATGGACAAGACAGAAAAAGAGGAACACAACTTCAGCTGGAACTTCTCGCAAAGGTAGGCTGGTGAAAAATGATACGGACGATGACATTTTGGAGCCCTTTTATGATTCTGAGCAAGAGAACGACCCACTACGAATTCACCATAGGCAAAATGAGATTATAGCTCCATCTAGCAGTTCACGTAGTGGGAGGAATAAAGGTATATTGAGGGTTACGCAAGCATCTAATGAGAGATTTTATGCCCACAACGAGGGTTTGGAAAATGCTGAAGATATTGAGGATTTGAATGATCTTTCTTTTGAAGATTCATTACATGCTAATGATGGGTCATCTTCCCTAGCTACAAAAAATCATTGTGTAGCTGTTGATGAGGATTTTAATGATAAAGAACCTCGTACCAGATTGCCCAAATCAACAGAATTATCGTGTGTCATATGTTGGACAGATTTCAGTTCAACCAGAGGGGTTCTACCATGTGGACATCGGTTTTGTTTTTCTTGCATCCAGAGTTGGGCTGATCATATGGTATACATTCTCTACTTCCTTAATTTCTTTATTTGA

Network for GWHGAAZE023159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12738.8	PTCB-BRCT	24	86	1.60E-21
PF13639.7	zf-RING_2	361	392	2.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.250
	SRR3591706	second leaf	1.282
	SRR3591707	mature leaf	5.580
	SRR3591708	Shoot apex	7.829
	SRR3591709	Stem	4.035
	SRR3591710	White floral bud	1.386
	SRR3591711	White flower	0.858
	SRR3591712	Green floral bud	1.097
	SRR3591713	Yellow flower	0.887
SRP173429	SRR8316895	Juvenile bud stage	1.880
	SRR8316896	Juvenile bud stage	1.930
	SRR8316897	Juvenile bud stage	1.744
	SRR8316894	Third green stage	0.483
	SRR8316900	Third green stage	1.406
	SRR8316901	Third green stage	1.666
	SRR8316898	Complete white stage	0.104
	SRR8316899	Complete white stage	0.914
	SRR8316903	Complete white stage	0.421
	SRR8316902	Silver flowering stage	0.357
	SRR8316904	Silver flowering stage	0.371
	SRR8316905	Silver flowering stage	0.187
	SRR8316906	Gold flowering stage	0.181
	SRR8316907	Gold flowering stage	0.094
	SRR8316908	Gold flowering stage	0.468
SRP132670	SRR6706286	Control	0.813
	SRR6706287	Light intensity 50%	0.605
	SRR6706288	Light intensity 20%	0.844
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.797
	CNS0095593	Slightly white alabastrum(diploid) 2	0.667
	CNS0095594	Slightly white alabastrum(diploid) 3	0.585
	CNS0095595	Whole white alabastrum(diploid) 2	1.055
	CNS0095596	Whole white alabastrum(diploid) 3	1.076
	CNS0095597	Whole white alabastrum(diploid) 4	0.681
	CNS0095598	Silvery flower (diploied) 1	1.273
	CNS0095599	Silvery flower (diploied) 2	1.073
	CNS0095600	Silvery flower (diploied) 3	0.806
	CNS0095601	Golden flower (diploid) 1	0.324
	CNS0095602	Golden flower (diploid) 2	0.659
	CNS0095603	Golden flower (diploid) 3	1.019
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.361
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.016
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.406
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.819
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.318
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.452
	CNS0095610	Silvery flower (tetraploid) 1	1.075
	CNS0095611	Silvery flower (tetraploid) 2	0.927
	CNS0095612	Silvery flower (tetraploid) 3	0.284
	CNS0095613	Golden flower (tetraploid) 1	0.570
	CNS0095614	Golden flower (tetraploid) 2	0.358
	CNS0095615	Golden flower (tetraploid) 3	0.392
CRA001975	CRR073297	Stem 1	2.725
	CRR073298	Stem 2	2.270
	CRR073299	Stem 3	2.725
	CRR073300	Leaf 1	1.225
	CRR073301	Leaf 2	0.848
	CRR073302	Leaf 3	0.508
	CRR073303	Juvenile bud 1	0.679
	CRR073304	Juvenile bud 2	0.905
	CRR073305	Juvenile bud 3	0.868
	CRR073306	Third green 1	0.069
	CRR073307	Third green 2	0.182
	CRR073308	Third green 3	0.093
	CRR073309	Second white 1	0.250
	CRR073310	Second white 2	0.038
	CRR073311	Second white 3	0.570
	CRR073312	Silver flowering 1	0.795
	CRR073313	Silver flowering 2	0.335
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.804
	CRR073316	Gold flowering 2	6.896
	CRR073317	Gold flowering 3	4.876
	CRR073318	Tawny withering 1	1.494
	CRR073319	Tawny withering 2	1.765
	CRR073320	Tawny withering 3	2.019