Detail information of GWHGAAZE023173


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAX45184.15.53261E-62CYCLOIDEA-like [Lonicera heteroloba]
Swissprottr|Q9FYG7|TCP1_ARATH9E-32Transcription factor TCP1
trEMBLtr|Q2TKU0|Q2TKU0_9DIPS2E-62CYCLOIDEA-like {ECO:0000313|EMBL:AAX45184.1} (Fragment)
TAIR10AT1G67260.24E-24TCP family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene10612411062151-
GWHAAZE00000007mRNA10612411062151-
GWHAAZE00000007exon10612411061299-
GWHAAZE00000007exon10613951062151-
GWHAAZE00000007CDS10613951062151-
GWHAAZE00000007CDS10612411061299-
Transcript Sequence

Network for GWHGAAZE023173

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03634.14TCP702085.40E-42
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTCP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.213
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.819
SRR3591709Stem0.000
SRR3591710White floral bud4.187
SRR3591711White flower0.741
SRR3591712Green floral bud18.826
SRR3591713Yellow flower0.814
SRP173429 SRR8316895Juvenile bud stage 19.039
SRR8316896Juvenile bud stage 15.723
SRR8316897Juvenile bud stage 10.102
SRR8316894Third green stage 6.459
SRR8316900Third green stage 16.688
SRR8316901Third green stage 14.757
SRR8316898Complete white stage 2.689
SRR8316899Complete white stage 25.613
SRR8316903Complete white stage 3.147
SRR8316902Silver flowering stage0.385
SRR8316904Silver flowering stage0.494
SRR8316905Silver flowering stage0.315
SRR8316906Gold flowering stage 0.048
SRR8316907Gold flowering stage 0.227
SRR8316908Gold flowering stage 0.728
SRP132670SRR6706286Control27.760
SRR6706287Light intensity 50%29.539
SRR6706288Light intensity 20%33.358
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.160
CNS0095593Slightly white alabastrum(diploid) 220.422
CNS0095594Slightly white alabastrum(diploid) 313.784
CNS0095595Whole white alabastrum(diploid) 222.135
CNS0095596Whole white alabastrum(diploid) 312.574
CNS0095597Whole white alabastrum(diploid) 419.865
CNS0095598Silvery flower (diploied) 10.458
CNS0095599Silvery flower (diploied) 20.612
CNS0095600Silvery flower (diploied) 31.537
CNS0095601Golden flower (diploid) 10.651
CNS0095602Golden flower (diploid) 20.484
CNS0095603Golden flower (diploid) 30.702
CNS0095604Slightly white alabastrum(tetraploid) 123.407
CNS0095605Slightly white alabastrum(tetraploid) 221.804
CNS0095606Slightly white alabastrum(tetraploid) 338.992
CNS0095607Whole white alabastrum(tetraploid) 111.171
CNS0095608Whole white alabastrum(tetraploid) 211.869
CNS0095609Whole white alabastrum(tetraploid) 316.001
CNS0095610Silvery flower (tetraploid) 11.321
CNS0095611Silvery flower (tetraploid) 21.059
CNS0095612Silvery flower (tetraploid) 30.238
CNS0095613Golden flower (tetraploid) 10.156
CNS0095614Golden flower (tetraploid) 20.253
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 123.462
CRR073298Stem 223.022
CRR073299Stem 322.056
CRR073300Leaf 119.269
CRR073301Leaf 222.328
CRR073302Leaf 316.099
CRR073303Juvenile bud 122.399
CRR073304Juvenile bud 212.425
CRR073305Juvenile bud 328.499
CRR073306Third green 10.261
CRR073307Third green 20.456
CRR073308Third green 32.613
CRR073309Second white 10.028
CRR073310Second white 20.084
CRR073311Second white 30.000
CRR073312Silver flowering 10.058
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000