Gene detail

Detail information of GWHGAAZE023189

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269759.2	0	PREDICTED: histone-lysine N-methyltransferase SUVR5 [Vitis vinifera]
COG	YP_003280830.1	0.000001	nuclear protein SET
Swissprot	tr\|O64827\|SUVR5_ARATH	0	Histone-lysine N-methyltransferase SUVR5
trEMBL	tr\|F6GX09\|F6GX09_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44495.1}
TAIR10	AT2G23740.2	0	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1382706	1390230	-
GWHAAZE00000007	mRNA	1382706	1390230	-
GWHAAZE00000007	exon	1389814	1390230	-
GWHAAZE00000007	exon	1388793	1388903	-
GWHAAZE00000007	exon	1387386	1387496	-
GWHAAZE00000007	exon	1383982	1386759	-
GWHAAZE00000007	exon	1383668	1383829	-
GWHAAZE00000007	exon	1383485	1383580	-
GWHAAZE00000007	exon	1383295	1383398	-
GWHAAZE00000007	exon	1383038	1383175	-
GWHAAZE00000007	exon	1382706	1382829	-
GWHAAZE00000007	CDS	1389814	1390230	-
GWHAAZE00000007	CDS	1388793	1388903	-
GWHAAZE00000007	CDS	1387386	1387496	-
GWHAAZE00000007	CDS	1383982	1386759	-
GWHAAZE00000007	CDS	1383668	1383829	-
GWHAAZE00000007	CDS	1383485	1383580	-
GWHAAZE00000007	CDS	1383295	1383398	-
GWHAAZE00000007	CDS	1383038	1383175	-
GWHAAZE00000007	CDS	1382706	1382829	-

Transcript Sequence
>GWHTAAZE023219 ATGGAAATTCTTCCTTGTTCCGGCGTACGTTATGTGGGAGACTCCGATTGCCCGCAACAGGGTTCAACAACAGCTTTCGTGTACAACGGGGAAGTGAACCGCCTCGAACAAAGTGAGCAAGTTGAAGTAGTTGATGTTAAAGTGGACGATTTGGTGCTTAATGTTGAAGGGTCTCAAGAAGAAAGACAGGGTGGTGGTCGATGCGCGGTTGATGAATTTCCTACGCTAGAAGAAGCCCATTCTAATGGAGATTCATTTGATGAATTCGACTCTGAAGATGAAAGCCTAAATGCAGAGGATCATTGCGTGGGAAATAGCTCCTCTCTGATGAACTCTCAAGTAGCTGTGGATGATGTTGGGAGCGGATTGCCCAGTAGTATGGGTCAACAATATGAACCCATGGCAGTGTGGGTCAAGGCTCTGATAGAGACTGCTCGCAATGTGATGGTATGGAAGGAATTTGCAATGGAGGCTTACCGCAGTAAATGTTATTCTGATCTTGGAAGGATGCTTCTGAAACTTGAGAATATGATACTGCAGTGCTGCTTAAATTCTGATTGGTTGCAACATTCTTTACAATCTTGGGCACAACGATGCCAGAGTTCACGTAGTGCTGAATCCGTTGAAATGCTTAAGGAGGAGTTAGCTGATTCTATTATTTGGAATGAAGTAAACTCAATCTCGAATGTAGAATTGCATCCTGAGTTGGAATCTGAGTGGAAGACTTGGAAGCAAGAGGTTTTGAAATCATTTTCGATGTCGAATCCTGTATCTAGTGCTGGGGAAAGGGAGCAGCAGAGCAATGATAGTCCTTCAGCACCGAGTCTTCAGAGTAGCAGGAAGAGGGCCAAGCTCGAAGTCCGTCGTGCTGAGCCACATGCCTCGCCGGTGGAACCCCAGGGTCCACGCCAATCTGTCGAAATTGACTCCCGATTTTTCGATGGCCGAAATGCGTTAAGTTCCGCTACATTAGAACTGGACCAGCCCATTGGCCAAATTGATCAAACCAGAGCTGCACTGGTGGCCTCCACCCCTGGTGATAGATGGGGTGACATTGTGGTTGAAACTGGAAATTCTGTGTTAACTCAAACCAAAGATTTACAAGTGACCCCTTCGAGTGGAGTGGTTGCTCAGAAGTCATTGGAACTGGGGAGTAAAAATCGCCAGTGCATGGCTTTTATCGAAGCTAAGGGGAGGCAGTGTGTGAGGTGGGCAAATGATGGCGATGTTTATTGTTGTGTACACTTGGCGTCTCGTTTTGTTGCCAACTCGGCAAAAGCAGAAACAACACCCCCTGTTGATTCACCAATGTGTGAAGGTACCACTGTTCTTGGTACAAAATGCAAGCATCGATCTCTATTCGGCTCTTCTTTCTGTAAGAAACACAGACCCCATAATGAGAGAACGTCAACTTTGAGTTCACCCGAGAATAAACGTAAGAGACACCATGAGGAGAGCATAAACAGGCCCGAGTCTTCGTATTGCAAAGATATTGTATTGGTGGGTGAAGCGGGTCCCCTCCAAGTGGACCCTGTCTCAGTCATAAATGGAAACAGCAATGAGATGCTACAGTGCATAGGTTCGTGTTCCAATGATGGCAGTGGGCCTTGTTTGGAAAGTCCTAAACGGCATTCGTTGTACTGTGAAAAACATCTACCGAGCTGGCTTAAACGAGCAAGGAATGGCAAAAGTAGGATAGTTTCAAAGGAAGTGTTTATGGATCTTCTTAGGGATTGTTACTCACGCGAGCAAAAGTTGCATTTACACCAAGCGTGCGAGCTTTTCTACAGGCTCTTCAAAAGTATTTTATCCTTGCGAAATCCGGTTCCCAAGGAAATCCAACTCCAGTGGGCCATATCTGAAGCCTCGAAAGATGTTAGAGTTGGGGAGGTCTTAACAAAATTGGTTTGCTCTGAAAAGCAGAGACTCGAGCGGCTTTGGGGCTTCAATGCGGACAAAACTGCACCAAATTCACCTGTTCTGAATCCAATAGCTAATGATTATACTGGAAATGAAAATGTAATTAAGTGTAAAATTTGCCTGCAGAATTTTCTCGATGACCAAACACTCGGTGCACATTGGATGGAGAATCATAAAAAAGAAGCTCAGTGGCACTTTAGAGGCTATGTGTGTGCGATCTGCTTAGATTCTTTTACGAACAAGAAAGTTCTGGAAGCACACGTTCAGGAAAGACACTGCGTGCAATTCGTTGAACAGTGCATGCTTTACCAATGTATTCCTTGTGGTAGCCATTTTGGAAATCCCGACGAATTATGGTTGCATGTGCGTTCACTCCACGCGTCTAATTTCAGGCTGCCTAGCATGGCTCAATTGCATAATATTGAGATGCATAGTAATCTGTCTGTGGTTGAATATCCTTCTCAGAAACTCGAGCCAGGCAATGCTGACGGTTTCCACAAAATTGAAACAGCCAATTCAGCTTCTGCAGATAACACCAACTCTGAGAATCATGGAAGTTTCCGGAAGTTCATATGCAGGTTTTGTGGGATAAAGTTTGATTTGCTACCCGATCTTGGTCGCCACCATCAAGCTGCTCATATGGGCCCACATTCACTCAATCCTCGCCTTCCAAAACGAGGCATTCGGTTTTATGCGCATAGATTAAAATCAGGGAGACTTACACGTCCGAGATTTAAAAAGGGTCTCGGAGCAGCGTCGTATAAAATACGCAACAGGGCTAGTACAGGTATCAAGAAACATATATCACATTCATTTAGTACCAGCGAATTAGGTGTGCAATCTCACGTTAGCGAGACGGATAGTCTTGGTAGATTGGCGGAATCTCATTGCTCTGCTGTTGCAAAGATATTGTTTTCTGAGATTAAGAGAACTGAACCTCGGCCTAGTAACTTTGAGATTTTGTCTATAGCTCGATCTGCCTGCTGCAAGGTAAACCTACAGGCCTTGTTGGAGGAGAAATATAAACTCTTGCCTGAACGTTTATACTTGAAAGCAGCTAAAGTTTGTAGTGAGAATAATATTCTTGTCGACTGGCACCAAGACGGGTTTGTCTGTCCTAAAGGATGTATGCCAATCTCCGAATCACACCTGGCATCTCAGTTAGTGCCTTTATTGGATGGTGTAGTGGCACCCAGGTCGAAAATTCTGCGAGAGCCTGGGACCAATGAGTGGGCCATGGATGAGTGCCACTATATTATTGATTCCCGGCATTTTAGAAAGGAACCCGTTCAGAGAAGTATTATACTATGTGATGATATAAGCTTTGGAAAAGAATCGGTGCCAATAACATGTGTGGTGGATGAAAATCTTTTGGGGTCACTCAACGTCCTTGTAGATGGTTCTGATGGCCAAAACACTCCATCCTCTATGCCTTGGGAGACGTATACCTATATTATGAAGCCATTGCTTGATCGAATCCATCATGTTGACACAGAGAGTTTGCAGTTAGGGTGTGCTTGTGTACATTCAACATGCTCTTCTGGAACCTGCGATCATGTATACCTTTTTGATAATGACTATGAAGATGCAAAGGATGTATATGGCAAGCCTATGAGTGGCAGGTTCCCATATGATAAGAATGGTCGAATCATTTTGGAGGAAGGTTACCTAGTCTATGAATGCAATCAGCGGTGCCGCTGCAGTAGAGCCTGCCAGAATAGGGTTTTGCAGAATGGCGTACGAGCAAAATTAGAGGGTTGGGCGGTCCGGGCAGGGGAAGCAATTCTGCGTGGCACATTTGTTTGTGAGTATGTCGGGGAGGTTATCGACGAGGAGGAAGCAAACAAGAGACGCACTAGGTATGGTAAGGAAGGTTGCAGCTATTTCTACGACATTGACTCTCAAAGTAATGACATGAGCAGATTGATTGAGGGGCAGGCTCCATATGTAATTGATGCAAGAAATTATGGAAATGTTTCACGTTTTATCAATCACAGCTGCTCGCCAAATCTGACAAATCATCAAGTTCTTGTGGAAAGCATGGATTGTCAACTCGCCCACATTGGGTTCTATGCGAGTCAAGATGCAAGAATTCTCCTCTTTCTATTTTCTCATCCTTAA

Network for GWHGAAZE023189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18868.2	zf-C2H2_3rep	711	854	1.20E-54
PF05033.17	Pre-SET	1080	1214	2.90E-14
PF00856.29	SET	1226	1335	2.70E-15

Protein Sequence

>GWHPAAZE023205
MEILPCSGVRYVGDSDCPQQGSTTAFVYNGEVNRLEQSEQVEVVDVKVDDLVLNVEGSQEERQGGGRCAVDEFPTLEEAHSNGDSFDEFDSEDESLNAEDHCVGNSSSLMNSQVAVDDVGSGLPSSMGQQYEPMAVWVKALIETARNVMVWKEFAMEAYRSKCYSDLGRMLLKLENMILQCCLNSDWLQHSLQSWAQRCQSSRSAESVEMLKEELADSIIWNEVNSISNVELHPELESEWKTWKQEVLKSFSMSNPVSSAGEREQQSNDSPSAPSLQSSRKRAKLEVRRAEPHASPVEPQGPRQSVEIDSRFFDGRNALSSATLELDQPIGQIDQTRAALVASTPGDRWGDIVVETGNSVLTQTKDLQVTPSSGVVAQKSLELGSKNRQCMAFIEAKGRQCVRWANDGDVYCCVHLASRFVANSAKAETTPPVDSPMCEGTTVLGTKCKHRSLFGSSFCKKHRPHNERTSTLSSPENKRKRHHEESINRPESSYCKDIVLVGEAGPLQVDPVSVINGNSNEMLQCIGSCSNDGSGPCLESPKRHSLYCEKHLPSWLKRARNGKSRIVSKEVFMDLLRDCYSREQKLHLHQACELFYRLFKSILSLRNPVPKEIQLQWAISEASKDVRVGEVLTKLVCSEKQRLERLWGFNADKTAPNSPVLNPIANDYTGNENVIKCKICLQNFLDDQTLGAHWMENHKKEAQWHFRGYVCAICLDSFTNKKVLEAHVQERHCVQFVEQCMLYQCIPCGSHFGNPDELWLHVRSLHASNFRLPSMAQLHNIEMHSNLSVVEYPSQKLEPGNADGFHKIETANSASADNTNSENHGSFRKFICRFCGIKFDLLPDLGRHHQAAHMGPHSLNPRLPKRGIRFYAHRLKSGRLTRPRFKKGLGAASYKIRNRASTGIKKHISHSFSTSELGVQSHVSETDSLGRLAESHCSAVAKILFSEIKRTEPRPSNFEILSIARSACCKVNLQALLEEKYKLLPERLYLKAAKVCSENNILVDWHQDGFVCPKGCMPISESHLASQLVPLLDGVVAPRSKILREPGTNEWAMDECHYIIDSRHFRKEPVQRSIILCDDISFGKESVPITCVVDENLLGSLNVLVDGSDGQNTPSSMPWETYTYIMKPLLDRIHHVDTESLQLGCACVHSTCSSGTCDHVYLFDNDYEDAKDVYGKPMSGRFPYDKNGRIILEEGYLVYECNQRCRCSRACQNRVLQNGVRAKLEGWAVRAGEAILRGTFVCEYVGEVIDEEEANKRRTRYGKEGCSYFYDIDSQSNDMSRLIEGQAPYVIDARNYGNVSRFINHSCSPNLTNHQVLVESMDCQLAHIGFYASQDARILLFLFSHP

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0005515	molecular_function	protein binding
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.245
	SRR3591706	second leaf	12.210
	SRR3591707	mature leaf	10.253
	SRR3591708	Shoot apex	18.159
	SRR3591709	Stem	18.529
	SRR3591710	White floral bud	19.824
	SRR3591711	White flower	17.356
	SRR3591712	Green floral bud	16.233
	SRR3591713	Yellow flower	9.421
SRP173429	SRR8316895	Juvenile bud stage	12.816
	SRR8316896	Juvenile bud stage	20.113
	SRR8316897	Juvenile bud stage	10.709
	SRR8316894	Third green stage	6.984
	SRR8316900	Third green stage	17.260
	SRR8316901	Third green stage	17.338
	SRR8316898	Complete white stage	5.692
	SRR8316899	Complete white stage	15.632
	SRR8316903	Complete white stage	11.115
	SRR8316902	Silver flowering stage	4.220
	SRR8316904	Silver flowering stage	6.703
	SRR8316905	Silver flowering stage	3.011
	SRR8316906	Gold flowering stage	8.476
	SRR8316907	Gold flowering stage	9.068
	SRR8316908	Gold flowering stage	9.361
SRP132670	SRR6706286	Control	19.278
	SRR6706287	Light intensity 50%	21.121
	SRR6706288	Light intensity 20%	20.874
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.165
	CNS0095593	Slightly white alabastrum(diploid) 2	9.845
	CNS0095594	Slightly white alabastrum(diploid) 3	12.522
	CNS0095595	Whole white alabastrum(diploid) 2	9.402
	CNS0095596	Whole white alabastrum(diploid) 3	8.936
	CNS0095597	Whole white alabastrum(diploid) 4	9.518
	CNS0095598	Silvery flower (diploied) 1	11.788
	CNS0095599	Silvery flower (diploied) 2	10.034
	CNS0095600	Silvery flower (diploied) 3	14.695
	CNS0095601	Golden flower (diploid) 1	9.664
	CNS0095602	Golden flower (diploid) 2	16.332
	CNS0095603	Golden flower (diploid) 3	15.878
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.977
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.702
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.139
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.493
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.972
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.369
	CNS0095610	Silvery flower (tetraploid) 1	15.955
	CNS0095611	Silvery flower (tetraploid) 2	16.558
	CNS0095612	Silvery flower (tetraploid) 3	19.357
	CNS0095613	Golden flower (tetraploid) 1	6.498
	CNS0095614	Golden flower (tetraploid) 2	12.282
	CNS0095615	Golden flower (tetraploid) 3	9.511
CRA001975	CRR073297	Stem 1	22.522
	CRR073298	Stem 2	21.034
	CRR073299	Stem 3	12.167
	CRR073300	Leaf 1	23.719
	CRR073301	Leaf 2	22.729
	CRR073302	Leaf 3	8.668
	CRR073303	Juvenile bud 1	8.513
	CRR073304	Juvenile bud 2	5.612
	CRR073305	Juvenile bud 3	10.441
	CRR073306	Third green 1	3.237
	CRR073307	Third green 2	2.558
	CRR073308	Third green 3	4.210
	CRR073309	Second white 1	4.657
	CRR073310	Second white 2	4.231
	CRR073311	Second white 3	7.281
	CRR073312	Silver flowering 1	7.311
	CRR073313	Silver flowering 2	8.790
	CRR073314	Silver flowering 3	7.644
	CRR073315	Gold flowering 1	4.514
	CRR073316	Gold flowering 2	9.691
	CRR073317	Gold flowering 3	6.424
	CRR073318	Tawny withering 1	10.210
	CRR073319	Tawny withering 2	8.234
	CRR073320	Tawny withering 3	8.288