Gene detail

Detail information of GWHGAAZE023205

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007047113.1	2.42287E-53	AP2/B3-like transcriptional factor family protein, putative [Theobroma cacao]
Swissprot	tr\|Q8L3W1\|VRN1_ARATH	3E-26	B3 domain-containing transcription factor VRN1
trEMBL	tr\|A0A061DG54\|A0A061DG54_THECC	9E-54	AP2/B3-like transcriptional factor family protein, putative {ECO:0000313\|EMBL:EOX91270.1}
TAIR10	AT3G18990.1	4E-24	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1603743	1615053	-
GWHAAZE00000007	mRNA	1603743	1615053	-
GWHAAZE00000007	exon	1603743	1604148	-
GWHAAZE00000007	exon	1604738	1604907	-
GWHAAZE00000007	exon	1608879	1609266	-
GWHAAZE00000007	exon	1612484	1612630	-
GWHAAZE00000007	exon	1613144	1613659	-
GWHAAZE00000007	exon	1614979	1615053	-
GWHAAZE00000007	CDS	1614979	1615053	-
GWHAAZE00000007	CDS	1613144	1613659	-
GWHAAZE00000007	CDS	1612484	1612630	-
GWHAAZE00000007	CDS	1608879	1609266	-
GWHAAZE00000007	CDS	1604738	1604907	-
GWHAAZE00000007	CDS	1603915	1604148	-
GWHAAZE00000007	three_prime_UTR	1603743	1603914	-

Transcript Sequence
>GWHTAAZE023235 ATGGCTTTTAAACCGGTGGAGGCACCACATTTCTGTAAAATTATTCAACCCCAAATTGTTCAAGATGGAAGACTAAGGGTCCCAAAAAAGTTTGTTGCAAAATATGGAAAGGATTTACTGGACCGCGTGTATTTAAAGGTTCCATGTGGCTCCAAGTGGCTAGTGAATTTGAGTATTTCAAATGGTGAAGTTTGGCTACAAGAAGGTTGGAAAGAATTTGCAGAGCATTACTCTATTGGTTTATGGCACTTCTTGGTATTCAGATATGAAGGAAATTCCCATTTCCATGTTCTTATATTCGACAAGTCAGCTTCTGAAATTGAGTACCCATCATCTAAATCCATCCATGAAGAACGGACCGACCTTAATGGTGAATCCCAACTGAAAAGAAAAGGTGTTATTGATGAGGATAATGGCAAAACTAAGAAGACAATAGCCAATTTGACAGACAAAGAACAACATTTTGAAGAGAGACACGTAGTGACCCAAATGGAAGAAAGTGCAAAATATGCGTCAAATCATAACCAGGCTTGCAGAATGAAGAATGTGAAGTCAGAGGAGGAGCCACATTCATTTGATTTTGTGAAAGAAACTGTACCAGTGAGCTTTACGAATAGATACTTCAACAAGAAGCTCAAATCTGGTGTAAATTTTACCCTTGGAATTAAAGATGAGAGAACTTGGCGAGTTAACTTTGCTACCCATACGCGCAAGCTGACTAAGGGTTGGACTACATTTCGGATTCCACCAGGCTTCATCAAGCAATTCAATGGAAGGACACCCAAAGAGGTCATCCTTAAAAATCTCAGTGGGAAAATTTGGCAGGTAGACATGGAAAAAGATAAAGATCGCCTCTTTCTTAAGAAGGGTTGGCCGGACTTTGTGAAGGATAGTTCTCTAGAGCCAGGCGAGTTCTTGGTTTTTAGATACAATGGAAGTTCAGCCTTCACTGTTAGAATATTTGGCAGGGATGGATGCAAGAAGAAAGATGATTTACCAAATGACGATACTACGCCCTCACATGTGAAGGTTGAAGCAACAAGCAAAACAGAGAGTGAATCTGAGCAGACTTGTCGAAAGCGAACCAATTTTGGGAAAAGCCAAACAAGACCTAAAAGATCAAGGGGTCCAGGGGAGAGCTCAACTAGGAGGATCAAAACGCGGTCATCATTTTCAGAAGTTGCTGTGGGGATTAAAGAAGAAGCTTATCAGGAAGTCGATAAGTTAATGTCCAACTCAAAACACCCTTCATTCAAACTTGTAATGCGGTCAACTTTCTTGCAAAGGGGTTACACGGATATGCCGAGACATTTTGCAAAGACGCATATAAAAGAAGGTACAAGTATTGTGAAGCTTCAGATTTCGAACAAGTCATGGCCAGTGAATACGATTCGAAAAAGTAGGTTATGTGGAGGTTGGCGCGCATTTGTGAGGGAAAACTCCCTTCAACTCGGAGATGTTTGTCTCTTTGAGCTCGTTGATAGGGATGACCCTGTGTTCAAAGTTACCGTTTTCAAACGCACCAACTAAGTGCATCACTTATATATATATGCTTTCACATGCACATATGTAGATAAATACATATGCATGTATGTATATGGGCAACCAGGTTGATCAAATGTTTCGTTGGGCTGTGGTGAAGATACGCACACATATACATACACAGCCCTTTTATAAGAGGATAGTTCTCTGTTCAAGAAAA

Network for GWHGAAZE023205

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	12	102	2.00E-12
PF02362.22	B3	246	323	7.70E-17
PF02362.22	B3	418	507	9.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.100
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.085
	SRR3591709	Stem	0.049
	SRR3591710	White floral bud	0.076
	SRR3591711	White flower	0.055
	SRR3591712	Green floral bud	0.033
	SRR3591713	Yellow flower	0.098
SRP173429	SRR8316895	Juvenile bud stage	0.048
	SRR8316896	Juvenile bud stage	0.078
	SRR8316897	Juvenile bud stage	0.368
	SRR8316894	Third green stage	0.042
	SRR8316900	Third green stage	0.034
	SRR8316901	Third green stage	0.042
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.078
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.004
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.064
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.191
SRP132670	SRR6706286	Control	0.030
	SRR6706287	Light intensity 50%	0.001
	SRR6706288	Light intensity 20%	0.028
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.274
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.141
	CNS0095596	Whole white alabastrum(diploid) 3	0.004
	CNS0095597	Whole white alabastrum(diploid) 4	0.062
	CNS0095598	Silvery flower (diploied) 1	0.002
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.129
	CNS0095601	Golden flower (diploid) 1	0.027
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.054
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.030
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.046
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.007
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.030
	CNS0095610	Silvery flower (tetraploid) 1	0.167
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.014
	CNS0095613	Golden flower (tetraploid) 1	0.189
	CNS0095614	Golden flower (tetraploid) 2	0.081
	CNS0095615	Golden flower (tetraploid) 3	0.005
CRA001975	CRR073297	Stem 1	0.028
	CRR073298	Stem 2	0.096
	CRR073299	Stem 3	0.003
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.174
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.089
	CRR073306	Third green 1	0.003
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.006
	CRR073310	Second white 2	0.010
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.042
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.056
	CRR073315	Gold flowering 1	0.040
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.088
	CRR073318	Tawny withering 1	0.007
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000