Gene detail

Detail information of GWHGAAZE023206

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP08404.1	1.11539E-43	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q851V1\|Y3160_ORYSJ	2E-25	Putative B3 domain-containing protein Os03g0621600
trEMBL	tr\|A0A068UJJ5\|A0A068UJJ5_COFCA	4E-44	Coffea canephora DH200=94 genomic scaffold, scaffold_32 {ECO:0000313\|EMBL:CDP08404.1}
TAIR10	AT5G66980.1	2E-18	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1618033	1620772	-
GWHAAZE00000007	mRNA	1618033	1620772	-
GWHAAZE00000007	exon	1618033	1618272	-
GWHAAZE00000007	exon	1618820	1618989	-
GWHAAZE00000007	exon	1619969	1620356	-
GWHAAZE00000007	exon	1620674	1620772	-
GWHAAZE00000007	CDS	1620674	1620772	-
GWHAAZE00000007	CDS	1619969	1620356	-
GWHAAZE00000007	CDS	1618820	1618989	-
GWHAAZE00000007	CDS	1618033	1618272	-

Transcript Sequence
>GWHTAAZE023236 ATGGAAAAGCGTGGTCCAGGTCGTCCAAGAGTCTCTCTCTTTGATCAAATTCCCGAGTTCTTCCAAGTCTATCTCCCAAATCAGAACTCTCAGCAACTGCGGATGCCACCAGACTTCATCAAGCATTTCAATGGAAGAACACCCAAAGAGGTCATCCTTAAAAATCTCGGTGGGAAAATTTGGCATGTAGACGTGGAAAAAGATAAAGGTGGCCTGTTTCTTAAGAAGGGCTGGCCGGACTTTGTGAAAGATAGTTCTCTAGAGCTGGGTGAGTTCTTGGTTTTTAGATACAATGGAATTTCGGCCTTCAGTGTTAGAATATTTGGTAGGGATGGATGCAAGGAGGAAGATGATTTACCAAATGACAATACCGCCCCCACACGTGTAAAGGTTGAAGCAGCGAGTGAAACAGAGAGTGAATCTGAGCGGACTTGTCGAAAGCGAACCAATTTGGGGAAAAGCCAAACTACGCCTAAAAGATCAAGGGGTCTCGAGGAGAGCTCAATTAGGAGGATCAAAACAAGGTCTGCATTTCCAGAAGTTGCTGCGGGGATCAAAGAAGAAGCTGATCAAGAAGTTGTCAAGTTAATGTCCAAGTCCAAATATCCTTCATTCAAACTTGTAATGGGGCCAAATTTCTTGCAAAAGGGATTCTTGGATATTCCAAAACCATTTGCAAAGATGCATATAAAAGAAGGTACAAGTATTGTGAAGCTTCAGATTTCAAACAAGTCATGGCCAGTGAAGACAATCCCTCTTAGAAAAAGTAGGTTATGTGGAGGTTGGCAGTCGTTTGCATGTGAAAACTCCCTTGAACTCGGAGATGTTTCTCTCTTTGAGCTCATTGATAGGGATGATCTTGTGTTCAAAGTTACCATTTTCAAACACACCAACTAA

Network for GWHGAAZE023206

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	23	109	1.20E-16
PF02362.22	B3	205	296	1.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.140
	SRR3591706	second leaf	0.339
	SRR3591707	mature leaf	0.135
	SRR3591708	Shoot apex	0.540
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.164
	SRR3591711	White flower	0.329
	SRR3591712	Green floral bud	0.537
	SRR3591713	Yellow flower	0.466
SRP173429	SRR8316895	Juvenile bud stage	0.887
	SRR8316896	Juvenile bud stage	1.333
	SRR8316897	Juvenile bud stage	0.445
	SRR8316894	Third green stage	0.261
	SRR8316900	Third green stage	0.636
	SRR8316901	Third green stage	0.372
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.068
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.023
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.041
	SRR8316907	Gold flowering stage	0.060
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.256
	SRR6706287	Light intensity 50%	0.177
	SRR6706288	Light intensity 20%	0.152
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.188
	CNS0095593	Slightly white alabastrum(diploid) 2	0.374
	CNS0095594	Slightly white alabastrum(diploid) 3	0.718
	CNS0095595	Whole white alabastrum(diploid) 2	0.356
	CNS0095596	Whole white alabastrum(diploid) 3	0.854
	CNS0095597	Whole white alabastrum(diploid) 4	0.485
	CNS0095598	Silvery flower (diploied) 1	0.415
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.192
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.266
	CNS0095603	Golden flower (diploid) 3	0.121
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.716
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.969
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.069
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.629
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.352
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.466
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.022
	CNS0095612	Silvery flower (tetraploid) 3	0.320
	CNS0095613	Golden flower (tetraploid) 1	0.198
	CNS0095614	Golden flower (tetraploid) 2	0.039
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.995
	CRR073298	Stem 2	0.390
	CRR073299	Stem 3	0.506
	CRR073300	Leaf 1	0.255
	CRR073301	Leaf 2	0.255
	CRR073302	Leaf 3	0.157
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.106
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.038
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.115
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.204
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.101
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.273
	CRR073316	Gold flowering 2	0.286
	CRR073317	Gold flowering 3	0.183
	CRR073318	Tawny withering 1	0.029
	CRR073319	Tawny withering 2	0.281
	CRR073320	Tawny withering 3	0.457