Gene detail

Detail information of GWHGAAZE023207

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007047113.1	3.37275E-56	AP2/B3-like transcriptional factor family protein, putative [Theobroma cacao]
Swissprot	tr\|Q8S2E6\|Y1235_ORYSJ	9E-24	B3 domain-containing protein Os01g0723500
trEMBL	tr\|A0A061DG54\|A0A061DG54_THECC	1E-56	AP2/B3-like transcriptional factor family protein, putative {ECO:0000313\|EMBL:EOX91270.1}
TAIR10	AT3G18990.1	1E-19	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1635665	1639925	-
GWHAAZE00000007	mRNA	1635665	1639925	-
GWHAAZE00000007	exon	1639847	1639925	-
GWHAAZE00000007	exon	1639031	1639604	-
GWHAAZE00000007	exon	1638558	1638795	-
GWHAAZE00000007	exon	1638189	1638440	-
GWHAAZE00000007	exon	1635665	1635922	-
GWHAAZE00000007	CDS	1639847	1639925	-
GWHAAZE00000007	CDS	1639031	1639604	-
GWHAAZE00000007	CDS	1638558	1638795	-
GWHAAZE00000007	CDS	1638189	1638440	-
GWHAAZE00000007	CDS	1635665	1635922	-

Transcript Sequence
>GWHTAAZE023237 ATGGCTTTTGAACCGGGAAATGCACCACACTTCTTCAAGATTATTCAACCGCAAATTGTTGAAAATGGAAGGCTAGTAAAAACCACTGTAGAAAATTTAACTCAAAAGGTTAATTTCTTACAGAGGATCCCAAAAAAGTTTGTTGCAAAATATGCAAAGGATCTATCGGACCATGTATATTTGAAGGTTCCAAATGATGAACTGTGGATGGTGAATTTGAGTATTTCAAATGGTGAAATTTGGCTACAAGAAGGTTGGAAAGAATTTGCAGAGCATTACTCTATTGGTTTATGGCACTTCTTGGTGTTCAGATATGAAGGAAATTCCAATTTCCATGTTCTTATTTTCGATACGTCTGCTTCTGAAATTGAATACCCATCACCCAAAACCATCCACGAAGAACGGACCAACCTTGATGGTGAATCCCAACTGAAAAGGAAAGGCATTATTGATGAGGATATTGTCAAAGGTAAGAAAACAAGAAGCAATTCAACATATAAAGAACAAAGTAGCACCCAACCTTGTAAGATGAAGATGAAGATGAAATTAGAGGAGATACATTCCTTTAATTTTGTGAAAGAACTTGGAGGCAAGAAAATTTTATTATGTCTTGTTTTACCCCAATTCCAGGTTGAGTTGGAATTGGAGCGCAAATATTGTGCATATACTGGTCAAATTCAAATAGGGCCTAATTTTATTGCAGATGGAGCAAGTGGATCAATGCCCTATACTCATGAAATTTCTTGCTTAAACTTTCCAAAAGGGCGCAAGGGAATGGCAAGTGACTCTGAAAATGAAAGAGCTCTTCAATCAGCTAAAGCTTTCACATCTAGAAATCCTTTCTTCATGGTTACAATACGACCATCTTATGTTACTGCCAAATCCGGCTTGAATATACCACAGGTTTTCGCCAAAAAATATTTCAGTAAGGAGGAGAGTGCTAATGTTACACTCCAAGTGGCGGATGGGATGAAAGTTTGGTCAGTTAAATGCCTTCTTTTGAAAAACTGTGCCAGACTCACTAATGGGTGGATAGGATTTGTGCAAGACAATCATGTGCAAGCGGGTGATGTTTGCATCTTGGAGTTGATAAATAGCGTTGAAAATTTGTTTAATGTTGTCATATTTCGAGCATCAGAAACTACCGTACCGTGGAGCTTTATGAAAATATATTTCAGCAAGAAAGATGAAGCTATTGTTAATGTTACCCTTGGAGTTTTCGATGGGAGAACTTGGTTGGTTAGCTGCGTTAACAACATGAAAAGGCTAAGTAAGGGTTGGCCTACATTTGCAAGTGATAGTTATCCGGAATTGGGTGATATTTGCATCTTCGACCTGATTAAGAGCCGAGAAAATTTCCTAAATGTAGTCATATTTCGAGCAAGGATGCAAATTAATTAA

Network for GWHGAAZE023207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	41	118	4.60E-10
PF02362.22	B3	282	378	8.60E-18
PF02362.22	B3	382	461	3.80E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.015
	SRR3591706	second leaf	0.176
	SRR3591707	mature leaf	0.430
	SRR3591708	Shoot apex	0.658
	SRR3591709	Stem	0.178
	SRR3591710	White floral bud	4.986
	SRR3591711	White flower	6.808
	SRR3591712	Green floral bud	0.620
	SRR3591713	Yellow flower	7.319
SRP173429	SRR8316895	Juvenile bud stage	0.282
	SRR8316896	Juvenile bud stage	0.352
	SRR8316897	Juvenile bud stage	0.099
	SRR8316894	Third green stage	0.054
	SRR8316900	Third green stage	0.529
	SRR8316901	Third green stage	0.286
	SRR8316898	Complete white stage	3.479
	SRR8316899	Complete white stage	0.706
	SRR8316903	Complete white stage	4.315
	SRR8316902	Silver flowering stage	5.340
	SRR8316904	Silver flowering stage	5.018
	SRR8316905	Silver flowering stage	2.545
	SRR8316906	Gold flowering stage	6.313
	SRR8316907	Gold flowering stage	6.088
	SRR8316908	Gold flowering stage	3.182
SRP132670	SRR6706286	Control	0.175
	SRR6706287	Light intensity 50%	0.222
	SRR6706288	Light intensity 20%	0.084
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.452
	CNS0095593	Slightly white alabastrum(diploid) 2	0.278
	CNS0095594	Slightly white alabastrum(diploid) 3	0.015
	CNS0095595	Whole white alabastrum(diploid) 2	0.273
	CNS0095596	Whole white alabastrum(diploid) 3	0.069
	CNS0095597	Whole white alabastrum(diploid) 4	0.147
	CNS0095598	Silvery flower (diploied) 1	1.733
	CNS0095599	Silvery flower (diploied) 2	1.696
	CNS0095600	Silvery flower (diploied) 3	3.310
	CNS0095601	Golden flower (diploid) 1	1.067
	CNS0095602	Golden flower (diploid) 2	1.520
	CNS0095603	Golden flower (diploid) 3	1.099
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.063
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.089
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.194
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.029
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.105
	CNS0095610	Silvery flower (tetraploid) 1	1.817
	CNS0095611	Silvery flower (tetraploid) 2	0.378
	CNS0095612	Silvery flower (tetraploid) 3	4.868
	CNS0095613	Golden flower (tetraploid) 1	4.717
	CNS0095614	Golden flower (tetraploid) 2	1.107
	CNS0095615	Golden flower (tetraploid) 3	2.240
CRA001975	CRR073297	Stem 1	0.464
	CRR073298	Stem 2	0.418
	CRR073299	Stem 3	0.139
	CRR073300	Leaf 1	0.196
	CRR073301	Leaf 2	0.154
	CRR073302	Leaf 3	0.033
	CRR073303	Juvenile bud 1	0.093
	CRR073304	Juvenile bud 2	0.209
	CRR073305	Juvenile bud 3	0.130
	CRR073306	Third green 1	7.242
	CRR073307	Third green 2	6.778
	CRR073308	Third green 3	6.405
	CRR073309	Second white 1	7.272
	CRR073310	Second white 2	8.152
	CRR073311	Second white 3	5.883
	CRR073312	Silver flowering 1	6.651
	CRR073313	Silver flowering 2	5.745
	CRR073314	Silver flowering 3	3.467
	CRR073315	Gold flowering 1	0.344
	CRR073316	Gold flowering 2	0.323
	CRR073317	Gold flowering 3	0.017
	CRR073318	Tawny withering 1	0.313
	CRR073319	Tawny withering 2	0.292
	CRR073320	Tawny withering 3	0.135