Detail information of GWHGAAZE023214


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006338238.10PREDICTED: mediator of RNA polymerase II transcription subunit 15-like isoform X1 [Solanum tuberosum]
Swissprottr|Q8RWH9|NUP58_ARATH1E-175Nuclear pore complex protein NUP58 {ECO:0000303|PubMed:21189294}
trEMBLtr|M1AMQ0|M1AMQ0_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400026136}
TAIR10AT4G37130.13E-116hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene17858601792830-
GWHAAZE00000007mRNA17858601792830-
GWHAAZE00000007exon17858601785900-
GWHAAZE00000007exon17864081786939-
GWHAAZE00000007exon17896661790142-
GWHAAZE00000007exon17915091791623-
GWHAAZE00000007exon17925111792830-
GWHAAZE00000007CDS17925111792830-
GWHAAZE00000007CDS17915091791623-
GWHAAZE00000007CDS17896661790142-
GWHAAZE00000007CDS17864081786939-
GWHAAZE00000007CDS17858601785900-
Transcript Sequence

Network for GWHGAAZE023214

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15967.6Nucleoporin_FG22394703.10E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14307NUPL1, NUP49 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.723
SRR3591706second leaf2.902
SRR3591707mature leaf3.122
SRR3591708Shoot apex8.036
SRR3591709Stem4.397
SRR3591710White floral bud3.064
SRR3591711White flower5.187
SRR3591712Green floral bud4.670
SRR3591713Yellow flower3.162
SRP173429 SRR8316895Juvenile bud stage 5.386
SRR8316896Juvenile bud stage 6.470
SRR8316897Juvenile bud stage 0.961
SRR8316894Third green stage 3.851
SRR8316900Third green stage 6.443
SRR8316901Third green stage 7.251
SRR8316898Complete white stage 2.293
SRR8316899Complete white stage 8.738
SRR8316903Complete white stage 4.004
SRR8316902Silver flowering stage2.013
SRR8316904Silver flowering stage3.115
SRR8316905Silver flowering stage1.860
SRR8316906Gold flowering stage 6.250
SRR8316907Gold flowering stage 6.532
SRR8316908Gold flowering stage 2.618
SRP132670SRR6706286Control11.396
SRR6706287Light intensity 50%10.498
SRR6706288Light intensity 20%10.470
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.847
CNS0095593Slightly white alabastrum(diploid) 22.910
CNS0095594Slightly white alabastrum(diploid) 33.348
CNS0095595Whole white alabastrum(diploid) 24.316
CNS0095596Whole white alabastrum(diploid) 34.162
CNS0095597Whole white alabastrum(diploid) 42.936
CNS0095598Silvery flower (diploied) 15.046
CNS0095599Silvery flower (diploied) 23.988
CNS0095600Silvery flower (diploied) 36.966
CNS0095601Golden flower (diploid) 15.752
CNS0095602Golden flower (diploid) 26.807
CNS0095603Golden flower (diploid) 37.029
CNS0095604Slightly white alabastrum(tetraploid) 10.669
CNS0095605Slightly white alabastrum(tetraploid) 20.559
CNS0095606Slightly white alabastrum(tetraploid) 32.057
CNS0095607Whole white alabastrum(tetraploid) 10.402
CNS0095608Whole white alabastrum(tetraploid) 20.300
CNS0095609Whole white alabastrum(tetraploid) 31.484
CNS0095610Silvery flower (tetraploid) 11.271
CNS0095611Silvery flower (tetraploid) 21.030
CNS0095612Silvery flower (tetraploid) 31.089
CNS0095613Golden flower (tetraploid) 10.498
CNS0095614Golden flower (tetraploid) 21.385
CNS0095615Golden flower (tetraploid) 31.429
CRA001975CRR073297Stem 116.868
CRR073298Stem 214.892
CRR073299Stem 316.197
CRR073300Leaf 113.430
CRR073301Leaf 214.476
CRR073302Leaf 312.606
CRR073303Juvenile bud 111.689
CRR073304Juvenile bud 28.612
CRR073305Juvenile bud 314.336
CRR073306Third green 12.289
CRR073307Third green 24.105
CRR073308Third green 33.492
CRR073309Second white 15.681
CRR073310Second white 25.749
CRR073311Second white 35.007
CRR073312Silver flowering 15.745
CRR073313Silver flowering 27.314
CRR073314Silver flowering 34.705
CRR073315Gold flowering 16.873
CRR073316Gold flowering 28.957
CRR073317Gold flowering 39.598
CRR073318Tawny withering 114.296
CRR073319Tawny withering 211.892
CRR073320Tawny withering 311.253