Detail information of GWHGAAZE023220


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010065668.11.96451E-58PREDICTED: B3 domain-containing protein REM13-like isoform X2 [Eucalyptus grandis]
Swissprottr|Q8L3W1|VRN1_ARATH7E-25B3 domain-containing transcription factor VRN1
trEMBLtr|A0A067LKV0|A0A067LKV0_JATCU6E-57Uncharacterized protein {ECO:0000313|EMBL:KDP44974.1}
TAIR10AT3G18990.17E-23AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene18842551894059-
GWHAAZE00000007mRNA18842551894059-
GWHAAZE00000007exon18842551884658-
GWHAAZE00000007exon18852411885410-
GWHAAZE00000007exon18879681888355-
GWHAAZE00000007exon18914301891576-
GWHAAZE00000007exon18916771891858-
GWHAAZE00000007exon18922601892605-
GWHAAZE00000007exon18939851894059-
GWHAAZE00000007CDS18939851894059-
GWHAAZE00000007CDS18922601892605-
GWHAAZE00000007CDS18916771891858-
GWHAAZE00000007CDS18914301891576-
GWHAAZE00000007CDS18879681888355-
GWHAAZE00000007CDS18852411885410-
GWHAAZE00000007CDS18844251884658-
GWHAAZE00000007three_prime_UTR18842551884424-
Transcript Sequence

Network for GWHGAAZE023220

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B3121021.10E-12
PF02362.22B32503272.90E-16
PF02362.22B34225116.20E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.069
SRR3591706second leaf0.015
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.104
SRR3591709Stem0.000
SRR3591710White floral bud0.090
SRR3591711White flower0.126
SRR3591712Green floral bud0.179
SRR3591713Yellow flower0.036
SRP173429 SRR8316895Juvenile bud stage 0.310
SRR8316896Juvenile bud stage 0.363
SRR8316897Juvenile bud stage 0.202
SRR8316894Third green stage 0.201
SRR8316900Third green stage 0.482
SRR8316901Third green stage 0.201
SRR8316898Complete white stage 0.021
SRR8316899Complete white stage 0.805
SRR8316903Complete white stage 0.052
SRR8316902Silver flowering stage0.019
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.113
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.277
SRP132670SRR6706286Control0.092
SRR6706287Light intensity 50%0.168
SRR6706288Light intensity 20%0.165
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.336
CNS0095593Slightly white alabastrum(diploid) 20.131
CNS0095594Slightly white alabastrum(diploid) 30.736
CNS0095595Whole white alabastrum(diploid) 20.077
CNS0095596Whole white alabastrum(diploid) 30.326
CNS0095597Whole white alabastrum(diploid) 40.051
CNS0095598Silvery flower (diploied) 10.089
CNS0095599Silvery flower (diploied) 20.277
CNS0095600Silvery flower (diploied) 30.244
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.086
CNS0095603Golden flower (diploid) 30.110
CNS0095604Slightly white alabastrum(tetraploid) 10.765
CNS0095605Slightly white alabastrum(tetraploid) 20.314
CNS0095606Slightly white alabastrum(tetraploid) 30.374
CNS0095607Whole white alabastrum(tetraploid) 10.184
CNS0095608Whole white alabastrum(tetraploid) 20.160
CNS0095609Whole white alabastrum(tetraploid) 30.150
CNS0095610Silvery flower (tetraploid) 10.028
CNS0095611Silvery flower (tetraploid) 20.288
CNS0095612Silvery flower (tetraploid) 30.944
CNS0095613Golden flower (tetraploid) 11.648
CNS0095614Golden flower (tetraploid) 20.212
CNS0095615Golden flower (tetraploid) 30.686
CRA001975CRR073297Stem 10.199
CRR073298Stem 20.233
CRR073299Stem 30.179
CRR073300Leaf 10.722
CRR073301Leaf 20.428
CRR073302Leaf 30.112
CRR073303Juvenile bud 10.244
CRR073304Juvenile bud 20.134
CRR073305Juvenile bud 30.132
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.061
CRR073309Second white 10.000
CRR073310Second white 20.073
CRR073311Second white 30.000
CRR073312Silver flowering 10.193
CRR073313Silver flowering 20.054
CRR073314Silver flowering 30.081
CRR073315Gold flowering 10.609
CRR073316Gold flowering 20.728
CRR073317Gold flowering 30.271
CRR073318Tawny withering 10.008
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000