Gene detail

Detail information of GWHGAAZE023222

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN71750.1	2.2631E-61	hypothetical protein VITISV_040593 [Vitis vinifera]
Swissprot	tr\|Q8L3W1\|VRN1_ARATH	2E-24	B3 domain-containing transcription factor VRN1
trEMBL	tr\|A5AWG7\|A5AWG7_VITVI	8E-62	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN71750.1}
TAIR10	AT3G18990.1	4E-22	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1920312	1923598	-
GWHAAZE00000007	mRNA	1920312	1923598	-
GWHAAZE00000007	exon	1920312	1920620	-
GWHAAZE00000007	exon	1920726	1920828	-
GWHAAZE00000007	exon	1922034	1922122	-
GWHAAZE00000007	exon	1922240	1922367	-
GWHAAZE00000007	exon	1922889	1923249	-
GWHAAZE00000007	exon	1923524	1923598	-
GWHAAZE00000007	CDS	1923524	1923598	-
GWHAAZE00000007	CDS	1922889	1923249	-
GWHAAZE00000007	CDS	1922240	1922367	-
GWHAAZE00000007	CDS	1922034	1922122	-
GWHAAZE00000007	CDS	1920726	1920828	-
GWHAAZE00000007	CDS	1920312	1920620	-

Transcript Sequence
>GWHTAAZE023252 ATGGCTTTTGAACCGGGAAATGCACCACACTTCTTCAAGATTATTCAACCGCAAATTGTTGAAAATGGAAGGCTAGTTAATTTCTTACAGAGGATCCCAAAAAAGTTTGTTGCAAAATATGCAAAGGATCTATCGGACCATGTATATTTGAAGGTTCCAAATGATGAACTGTGGATGGTGAATTTGAGTATTTCAAATGGTGAAATTTGGCTACAAGAAGGTTGGAAAGAATTTGCAGAGCATTACTCTATTGGTTTATGGCACTTCTTGGTGTTCAGATATGAAGGAAATTCCAATTTCCATGTTCTTATATTCGATACGTCTGCTTCTGAAATTGAATACCCATCACCCAAAACCATCCACGAAGAACGGACCAACCTTGATGGTGAATCCCAACTGAAAAGGAAAGGCATTATTGATGAGGATATTGTCGAAGGGCGCAAGGGAATGGCAAGTGACTCTGAAAATGAAAGAGCTCTTCAATCAGCTAAAGCTTTCACATCTAGAAATCCTTTCTTCATGGTTACAATACGACCATCTTATGTTACTGCCAAATCCGGCTTGAATATACCGCAGGTTTTCGCCAAAAAATATTTCAGTAAGGAGGAGAGTGCTAATGTTACACTCCAAGTGGCGGATGGGATGAAAGTTTGGTTGAGGTTGAGCAGCATGGCTTACCAGCCGTTGATTGCACAGGCGGATGCACCATGCTTCTTCAAAATTATTCAACCACAAATTGTTCAAGATGGAAGGCTAGTTAATTTCTTACAGAGGATCCCAAAAAAGTTTGTAGCAAAATATGCTAAGGATCTATCGAACCGCGTATATTTAAAGGTTCCAAATGGTGAAATGTGGATGGTAAAGATGACTATTTCAAACGGTGAAGTTTGGCTACAAGATGGTTGGAAAGAATTTACAGACCATTACTCTATTGGTTTATGGCACTTCTTGGTATTCAAATATGAAGGAAATTCCCATGTCCATGTTCTTATATTTGACATGTCCGCTTCTGAAATTGAATATCCCTCACCCAAAAACATCCATGAAGAACGGGCCAACCTTGAT

Network for GWHGAAZE023222

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	18	107	1.20E-10
PF02362.22	B3	256	333	1.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.895
	SRR3591706	second leaf	0.394
	SRR3591707	mature leaf	0.116
	SRR3591708	Shoot apex	1.413
	SRR3591709	Stem	0.843
	SRR3591710	White floral bud	8.440
	SRR3591711	White flower	19.069
	SRR3591712	Green floral bud	1.187
	SRR3591713	Yellow flower	20.412
SRP173429	SRR8316895	Juvenile bud stage	0.688
	SRR8316896	Juvenile bud stage	0.480
	SRR8316897	Juvenile bud stage	0.170
	SRR8316894	Third green stage	0.176
	SRR8316900	Third green stage	0.812
	SRR8316901	Third green stage	0.505
	SRR8316898	Complete white stage	5.567
	SRR8316899	Complete white stage	2.014
	SRR8316903	Complete white stage	12.637
	SRR8316902	Silver flowering stage	8.811
	SRR8316904	Silver flowering stage	12.639
	SRR8316905	Silver flowering stage	4.412
	SRR8316906	Gold flowering stage	14.048
	SRR8316907	Gold flowering stage	12.472
	SRR8316908	Gold flowering stage	13.285
SRP132670	SRR6706286	Control	0.357
	SRR6706287	Light intensity 50%	0.237
	SRR6706288	Light intensity 20%	0.324
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.522
	CNS0095593	Slightly white alabastrum(diploid) 2	0.314
	CNS0095594	Slightly white alabastrum(diploid) 3	0.112
	CNS0095595	Whole white alabastrum(diploid) 2	0.328
	CNS0095596	Whole white alabastrum(diploid) 3	0.512
	CNS0095597	Whole white alabastrum(diploid) 4	0.585
	CNS0095598	Silvery flower (diploied) 1	1.627
	CNS0095599	Silvery flower (diploied) 2	3.015
	CNS0095600	Silvery flower (diploied) 3	6.869
	CNS0095601	Golden flower (diploid) 1	1.893
	CNS0095602	Golden flower (diploid) 2	4.332
	CNS0095603	Golden flower (diploid) 3	4.013
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.962
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.572
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.633
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.532
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.856
	CNS0095610	Silvery flower (tetraploid) 1	13.967
	CNS0095611	Silvery flower (tetraploid) 2	10.788
	CNS0095612	Silvery flower (tetraploid) 3	54.833
	CNS0095613	Golden flower (tetraploid) 1	58.558
	CNS0095614	Golden flower (tetraploid) 2	19.910
	CNS0095615	Golden flower (tetraploid) 3	45.069
CRA001975	CRR073297	Stem 1	0.796
	CRR073298	Stem 2	0.254
	CRR073299	Stem 3	0.123
	CRR073300	Leaf 1	0.407
	CRR073301	Leaf 2	0.567
	CRR073302	Leaf 3	0.056
	CRR073303	Juvenile bud 1	0.176
	CRR073304	Juvenile bud 2	0.356
	CRR073305	Juvenile bud 3	0.271
	CRR073306	Third green 1	4.825
	CRR073307	Third green 2	6.091
	CRR073308	Third green 3	4.332
	CRR073309	Second white 1	6.597
	CRR073310	Second white 2	7.704
	CRR073311	Second white 3	6.760
	CRR073312	Silver flowering 1	5.387
	CRR073313	Silver flowering 2	6.769
	CRR073314	Silver flowering 3	5.068
	CRR073315	Gold flowering 1	0.139
	CRR073316	Gold flowering 2	0.530
	CRR073317	Gold flowering 3	0.023
	CRR073318	Tawny withering 1	0.284
	CRR073319	Tawny withering 2	1.059
	CRR073320	Tawny withering 3	0.270