Detail information of GWHGAAZE023223


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN71750.11.94647E-94hypothetical protein VITISV_040593 [Vitis vinifera]
Swissprottr|Q8L3W1|VRN1_ARATH1E-34B3 domain-containing transcription factor VRN1
trEMBLtr|A5AWG7|A5AWG7_VITVI7E-95Putative uncharacterized protein {ECO:0000313|EMBL:CAN71750.1}
TAIR10AT3G18990.11E-31AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene19409801951848-
GWHAAZE00000007mRNA19409801951848-
GWHAAZE00000007exon19517141951848-
GWHAAZE00000007exon19510881951406-
GWHAAZE00000007exon19508231950980-
GWHAAZE00000007exon19505561950698-
GWHAAZE00000007exon19503571950445-
GWHAAZE00000007exon19487741948837-
GWHAAZE00000007exon19422521942360-
GWHAAZE00000007exon19417941942166-
GWHAAZE00000007exon19412721941432-
GWHAAZE00000007exon19409801941171-
GWHAAZE00000007CDS19517141951848-
GWHAAZE00000007CDS19510881951406-
GWHAAZE00000007CDS19508231950980-
GWHAAZE00000007CDS19505561950698-
GWHAAZE00000007CDS19503571950445-
GWHAAZE00000007CDS19487741948837-
GWHAAZE00000007CDS19422521942360-
GWHAAZE00000007CDS19417941942166-
GWHAAZE00000007CDS19412721941432-
GWHAAZE00000007CDS19409801941171-
Transcript Sequence

Network for GWHGAAZE023223

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B3331211.40E-14
PF02362.22B33254157.20E-13
PF02362.22B35035813.40E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.656
SRR3591706second leaf1.170
SRR3591707mature leaf0.664
SRR3591708Shoot apex1.405
SRR3591709Stem0.746
SRR3591710White floral bud6.820
SRR3591711White flower11.397
SRR3591712Green floral bud0.841
SRR3591713Yellow flower33.586
SRP173429 SRR8316895Juvenile bud stage 1.622
SRR8316896Juvenile bud stage 2.315
SRR8316897Juvenile bud stage 1.091
SRR8316894Third green stage 0.897
SRR8316900Third green stage 2.550
SRR8316901Third green stage 3.181
SRR8316898Complete white stage 2.964
SRR8316899Complete white stage 3.777
SRR8316903Complete white stage 4.030
SRR8316902Silver flowering stage6.845
SRR8316904Silver flowering stage9.807
SRR8316905Silver flowering stage3.701
SRR8316906Gold flowering stage 25.781
SRR8316907Gold flowering stage 28.230
SRR8316908Gold flowering stage 28.951
SRP132670SRR6706286Control1.280
SRR6706287Light intensity 50%1.381
SRR6706288Light intensity 20%1.099
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.492
CNS0095593Slightly white alabastrum(diploid) 21.695
CNS0095594Slightly white alabastrum(diploid) 32.269
CNS0095595Whole white alabastrum(diploid) 22.686
CNS0095596Whole white alabastrum(diploid) 32.874
CNS0095597Whole white alabastrum(diploid) 42.809
CNS0095598Silvery flower (diploied) 14.973
CNS0095599Silvery flower (diploied) 23.494
CNS0095600Silvery flower (diploied) 34.337
CNS0095601Golden flower (diploid) 18.029
CNS0095602Golden flower (diploid) 26.097
CNS0095603Golden flower (diploid) 36.497
CNS0095604Slightly white alabastrum(tetraploid) 13.012
CNS0095605Slightly white alabastrum(tetraploid) 22.951
CNS0095606Slightly white alabastrum(tetraploid) 33.853
CNS0095607Whole white alabastrum(tetraploid) 12.357
CNS0095608Whole white alabastrum(tetraploid) 22.558
CNS0095609Whole white alabastrum(tetraploid) 32.341
CNS0095610Silvery flower (tetraploid) 19.154
CNS0095611Silvery flower (tetraploid) 27.621
CNS0095612Silvery flower (tetraploid) 3106.144
CNS0095613Golden flower (tetraploid) 158.301
CNS0095614Golden flower (tetraploid) 217.068
CNS0095615Golden flower (tetraploid) 338.048
CRA001975CRR073297Stem 11.398
CRR073298Stem 21.178
CRR073299Stem 30.670
CRR073300Leaf 11.263
CRR073301Leaf 21.729
CRR073302Leaf 31.066
CRR073303Juvenile bud 11.030
CRR073304Juvenile bud 20.607
CRR073305Juvenile bud 30.444
CRR073306Third green 14.199
CRR073307Third green 24.190
CRR073308Third green 35.673
CRR073309Second white 13.903
CRR073310Second white 212.472
CRR073311Second white 311.668
CRR073312Silver flowering 112.826
CRR073313Silver flowering 29.834
CRR073314Silver flowering 311.638
CRR073315Gold flowering 10.695
CRR073316Gold flowering 20.778
CRR073317Gold flowering 30.410
CRR073318Tawny withering 10.914
CRR073319Tawny withering 21.392
CRR073320Tawny withering 30.531