Detail information of GWHGAAZE023229


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006338239.10PREDICTED: mediator of RNA polymerase II transcription subunit 15-like isoform X2 [Solanum tuberosum]
Swissprottr|Q8RWH9|NUP58_ARATH1E-178Nuclear pore complex protein NUP58 {ECO:0000303|PubMed:21189294}
trEMBLtr|M1AMQ0|M1AMQ0_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400026136}
TAIR10AT4G37130.14E-116hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene20347962041826-
GWHAAZE00000007mRNA20347962041826-
GWHAAZE00000007exon20347962034872-
GWHAAZE00000007exon20354062035913-
GWHAAZE00000007exon20386462039122-
GWHAAZE00000007exon20404932040607-
GWHAAZE00000007exon20415072041826-
GWHAAZE00000007CDS20415072041826-
GWHAAZE00000007CDS20404932040607-
GWHAAZE00000007CDS20386462039122-
GWHAAZE00000007CDS20354062035913-
GWHAAZE00000007CDS20347962034872-
Transcript Sequence

Network for GWHGAAZE023229

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15967.6Nucleoporin_FG22394893.50E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14307NUPL1, NUP49 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.308
SRR3591706second leaf7.640
SRR3591707mature leaf7.972
SRR3591708Shoot apex22.813
SRR3591709Stem13.010
SRR3591710White floral bud11.098
SRR3591711White flower14.352
SRR3591712Green floral bud12.203
SRR3591713Yellow flower11.829
SRP173429 SRR8316895Juvenile bud stage 5.654
SRR8316896Juvenile bud stage 8.628
SRR8316897Juvenile bud stage 8.850
SRR8316894Third green stage 4.110
SRR8316900Third green stage 8.251
SRR8316901Third green stage 7.022
SRR8316898Complete white stage 2.606
SRR8316899Complete white stage 9.784
SRR8316903Complete white stage 3.954
SRR8316902Silver flowering stage2.295
SRR8316904Silver flowering stage3.741
SRR8316905Silver flowering stage1.345
SRR8316906Gold flowering stage 6.327
SRR8316907Gold flowering stage 6.774
SRR8316908Gold flowering stage 11.575
SRP132670SRR6706286Control11.729
SRR6706287Light intensity 50%10.342
SRR6706288Light intensity 20%10.052
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.477
CNS0095593Slightly white alabastrum(diploid) 24.423
CNS0095594Slightly white alabastrum(diploid) 34.252
CNS0095595Whole white alabastrum(diploid) 24.104
CNS0095596Whole white alabastrum(diploid) 34.927
CNS0095597Whole white alabastrum(diploid) 43.451
CNS0095598Silvery flower (diploied) 15.867
CNS0095599Silvery flower (diploied) 23.075
CNS0095600Silvery flower (diploied) 36.537
CNS0095601Golden flower (diploid) 14.981
CNS0095602Golden flower (diploid) 28.186
CNS0095603Golden flower (diploid) 37.553
CNS0095604Slightly white alabastrum(tetraploid) 110.213
CNS0095605Slightly white alabastrum(tetraploid) 27.270
CNS0095606Slightly white alabastrum(tetraploid) 316.907
CNS0095607Whole white alabastrum(tetraploid) 15.275
CNS0095608Whole white alabastrum(tetraploid) 24.232
CNS0095609Whole white alabastrum(tetraploid) 39.048
CNS0095610Silvery flower (tetraploid) 110.448
CNS0095611Silvery flower (tetraploid) 211.974
CNS0095612Silvery flower (tetraploid) 38.651
CNS0095613Golden flower (tetraploid) 14.781
CNS0095614Golden flower (tetraploid) 28.640
CNS0095615Golden flower (tetraploid) 38.423
CRA001975CRR073297Stem 114.895
CRR073298Stem 215.709
CRR073299Stem 316.601
CRR073300Leaf 113.889
CRR073301Leaf 214.323
CRR073302Leaf 311.809
CRR073303Juvenile bud 113.445
CRR073304Juvenile bud 210.241
CRR073305Juvenile bud 317.335
CRR073306Third green 12.830
CRR073307Third green 23.064
CRR073308Third green 33.402
CRR073309Second white 16.272
CRR073310Second white 25.559
CRR073311Second white 35.101
CRR073312Silver flowering 15.654
CRR073313Silver flowering 26.316
CRR073314Silver flowering 36.007
CRR073315Gold flowering 14.864
CRR073316Gold flowering 210.388
CRR073317Gold flowering 38.242
CRR073318Tawny withering 116.364
CRR073319Tawny withering 211.781
CRR073320Tawny withering 314.580