Gene detail

Detail information of GWHGAAZE023300

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010647117.1	2.92455E-68	PREDICTED: probable disease resistance protein At5g66900 isoform X6 [Vitis vinifera]
Swissprot	tr\|Q9FKZ1\|DRL42_ARATH	7E-31	Probable disease resistance protein At5g66900
trEMBL	tr\|M5VW55\|M5VW55_PRUPE	1E-49	Uncharacterized protein {ECO:0000313\|EMBL:EMJ05627.1}
TAIR10	AT5G66900.1	3E-28	Disease resistance protein (CC-NBS-LRR class) family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	4696516	4699764	+
GWHAAZE00000007	mRNA	4696516	4699764	+
GWHAAZE00000007	exon	4696516	4696618	+
GWHAAZE00000007	exon	4697637	4697830	+
GWHAAZE00000007	exon	4698682	4699046	+
GWHAAZE00000007	exon	4699674	4699764	+
GWHAAZE00000007	CDS	4696516	4696618	+
GWHAAZE00000007	CDS	4697637	4697830	+
GWHAAZE00000007	CDS	4698682	4699046	+
GWHAAZE00000007	CDS	4699674	4699764	+

Transcript Sequence
>GWHTAAZE023330 ATGGTGTTAAACACTGATGCTTCTGTTGTTGTGCTTTCTGCTCCTGGTGGATGTGGGAAGACTACCCTGTCCAAAATGCTGTGTAAAGATAAGGAAATTCAAGATATTTATGGGAGAAACACATTCTTTGTGACTGTTTCAAAAACAGCCAACCTCAAGGACATTATTCAGAAAATATTTCAGTATAATGGTCGTTCACCGCCTCAATTTCAAAATATAGAAGATGCAATCAACCAGCTTGAATATTTGATGAGGCAGATTGTGCGAGATGGTCCCATACTGCTGGTCTTGGATGACATAGTGAGAGGTTGTAAAGGATTTCCTCTGGCCCTTACTGTGGTTGGCCGATCACTCTATGGGAGGGAGGTTGTAATCTGGAAACAGACTCTGAGGATATGGTCTCAAGGGAAATGTATTTTTGATGAGAACCGAGAAGATCTGCTTATGCCACTCCAAACCAGCTTAGATGTGTTAAATGAAAAGCCTATAGCCAAGGAGTGTTACTTGGACTTAGGCTCATTTCCTGAAGATCAAAAGATCACAGCCACTGTTCTTATGGATATGTGGGTCGCATTCTACGGCCAAGATGAACAGGGCATGGATGCCCTTGAAAACCTCCTTGAACTTTCCATCAGGAATCTTGTTAATCTCTTGCCTACAAGGAATGGTACAATTGAAGTTGATGGCTACTGTAATGAACATTATGTGATGCAGCATGATCTGTTGAGAGAACTAGCTATCTACCAGGAGTGA

Network for GWHGAAZE023300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0137

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	6	101	1.80E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.310
	SRR3591706	second leaf	5.002
	SRR3591707	mature leaf	7.673
	SRR3591708	Shoot apex	7.051
	SRR3591709	Stem	13.894
	SRR3591710	White floral bud	0.866
	SRR3591711	White flower	0.835
	SRR3591712	Green floral bud	0.956
	SRR3591713	Yellow flower	0.367
SRP173429	SRR8316895	Juvenile bud stage	2.908
	SRR8316896	Juvenile bud stage	3.080
	SRR8316897	Juvenile bud stage	0.748
	SRR8316894	Third green stage	1.973
	SRR8316900	Third green stage	4.424
	SRR8316901	Third green stage	4.263
	SRR8316898	Complete white stage	1.622
	SRR8316899	Complete white stage	7.438
	SRR8316903	Complete white stage	4.290
	SRR8316902	Silver flowering stage	1.323
	SRR8316904	Silver flowering stage	2.417
	SRR8316905	Silver flowering stage	0.518
	SRR8316906	Gold flowering stage	3.725
	SRR8316907	Gold flowering stage	2.608
	SRR8316908	Gold flowering stage	1.079
SRP132670	SRR6706286	Control	5.232
	SRR6706287	Light intensity 50%	3.780
	SRR6706288	Light intensity 20%	4.033
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.779
	CNS0095593	Slightly white alabastrum(diploid) 2	1.180
	CNS0095594	Slightly white alabastrum(diploid) 3	0.716
	CNS0095595	Whole white alabastrum(diploid) 2	1.604
	CNS0095596	Whole white alabastrum(diploid) 3	1.071
	CNS0095597	Whole white alabastrum(diploid) 4	0.949
	CNS0095598	Silvery flower (diploied) 1	2.494
	CNS0095599	Silvery flower (diploied) 2	1.325
	CNS0095600	Silvery flower (diploied) 3	3.756
	CNS0095601	Golden flower (diploid) 1	1.924
	CNS0095602	Golden flower (diploid) 2	3.876
	CNS0095603	Golden flower (diploid) 3	3.099
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.408
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.034
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.383
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.450
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.204
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.184
	CNS0095610	Silvery flower (tetraploid) 1	1.951
	CNS0095611	Silvery flower (tetraploid) 2	2.442
	CNS0095612	Silvery flower (tetraploid) 3	1.572
	CNS0095613	Golden flower (tetraploid) 1	0.850
	CNS0095614	Golden flower (tetraploid) 2	0.884
	CNS0095615	Golden flower (tetraploid) 3	1.339
CRA001975	CRR073297	Stem 1	3.714
	CRR073298	Stem 2	1.976
	CRR073299	Stem 3	1.007
	CRR073300	Leaf 1	2.967
	CRR073301	Leaf 2	2.646
	CRR073302	Leaf 3	0.293
	CRR073303	Juvenile bud 1	1.739
	CRR073304	Juvenile bud 2	0.350
	CRR073305	Juvenile bud 3	1.667
	CRR073306	Third green 1	0.215
	CRR073307	Third green 2	0.201
	CRR073308	Third green 3	0.079
	CRR073309	Second white 1	0.105
	CRR073310	Second white 2	0.621
	CRR073311	Second white 3	0.085
	CRR073312	Silver flowering 1	0.045
	CRR073313	Silver flowering 2	0.173
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.939
	CRR073316	Gold flowering 2	1.685
	CRR073317	Gold flowering 3	0.135
	CRR073318	Tawny withering 1	1.143
	CRR073319	Tawny withering 2	0.841
	CRR073320	Tawny withering 3	3.180