Detail information of GWHGAAZE023310


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009774046.12.10136E-63PREDICTED: LOB domain-containing protein 36-like [Nicotiana sylvestris]
Swissprottr|Q9FKZ3|LBD36_ARATH3E-53LOB domain-containing protein 36
trEMBLtr|M0ZJH4|M0ZJH4_SOLTU7E-62Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400002013}
TAIR10AT5G66870.12E-39ASYMMETRIC LEAVES 2-like 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene49628164963628-
GWHAAZE00000007mRNA49628164963628-
GWHAAZE00000007exon49628164963534-
GWHAAZE00000007exon49636074963628-
GWHAAZE00000007CDS49636074963628-
GWHAAZE00000007CDS49628164963534-
Transcript Sequence

Network for GWHGAAZE023310

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB9782.10E-22
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf1.854
SRR3591707mature leaf0.318
SRR3591708Shoot apex4.222
SRR3591709Stem0.071
SRR3591710White floral bud2.363
SRR3591711White flower0.610
SRR3591712Green floral bud7.359
SRR3591713Yellow flower0.277
SRP173429 SRR8316895Juvenile bud stage 2.802
SRR8316896Juvenile bud stage 6.288
SRR8316897Juvenile bud stage 1.613
SRR8316894Third green stage 1.668
SRR8316900Third green stage 5.640
SRR8316901Third green stage 5.409
SRR8316898Complete white stage 0.436
SRR8316899Complete white stage 0.571
SRR8316903Complete white stage 0.423
SRR8316902Silver flowering stage0.391
SRR8316904Silver flowering stage0.214
SRR8316905Silver flowering stage0.086
SRR8316906Gold flowering stage 0.909
SRR8316907Gold flowering stage 0.812
SRR8316908Gold flowering stage 0.387
SRP132670SRR6706286Control6.118
SRR6706287Light intensity 50%5.229
SRR6706288Light intensity 20%5.491
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.420
CNS0095593Slightly white alabastrum(diploid) 22.995
CNS0095594Slightly white alabastrum(diploid) 35.515
CNS0095595Whole white alabastrum(diploid) 24.267
CNS0095596Whole white alabastrum(diploid) 35.670
CNS0095597Whole white alabastrum(diploid) 45.304
CNS0095598Silvery flower (diploied) 10.488
CNS0095599Silvery flower (diploied) 20.181
CNS0095600Silvery flower (diploied) 30.468
CNS0095601Golden flower (diploid) 10.500
CNS0095602Golden flower (diploid) 20.346
CNS0095603Golden flower (diploid) 30.104
CNS0095604Slightly white alabastrum(tetraploid) 17.744
CNS0095605Slightly white alabastrum(tetraploid) 27.252
CNS0095606Slightly white alabastrum(tetraploid) 30.441
CNS0095607Whole white alabastrum(tetraploid) 18.093
CNS0095608Whole white alabastrum(tetraploid) 27.557
CNS0095609Whole white alabastrum(tetraploid) 36.656
CNS0095610Silvery flower (tetraploid) 10.414
CNS0095611Silvery flower (tetraploid) 20.438
CNS0095612Silvery flower (tetraploid) 30.764
CNS0095613Golden flower (tetraploid) 11.149
CNS0095614Golden flower (tetraploid) 21.421
CNS0095615Golden flower (tetraploid) 30.655
CRA001975CRR073297Stem 14.856
CRR073298Stem 24.176
CRR073299Stem 34.223
CRR073300Leaf 14.241
CRR073301Leaf 24.159
CRR073302Leaf 33.757
CRR073303Juvenile bud 12.568
CRR073304Juvenile bud 26.257
CRR073305Juvenile bud 30.165
CRR073306Third green 11.322
CRR073307Third green 20.405
CRR073308Third green 30.943
CRR073309Second white 10.497
CRR073310Second white 21.703
CRR073311Second white 31.834
CRR073312Silver flowering 11.440
CRR073313Silver flowering 21.396
CRR073314Silver flowering 31.505
CRR073315Gold flowering 10.824
CRR073316Gold flowering 20.115
CRR073317Gold flowering 30.055
CRR073318Tawny withering 10.202
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.210