Detail information of GWHGAAZE023311


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003635532.13.4379E-66PREDICTED: uncharacterized protein LOC100854002 [Vitis vinifera]
trEMBLtr|F6HJU4|F6HJU4_VITVI9E-67Putative uncharacterized protein {ECO:0000313|EMBL:CCB54197.1} (Fragment)
TAIR10AT5G66860.11E-43Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene49689244969866+
GWHAAZE00000007mRNA49689244969866+
GWHAAZE00000007exon49689244969283+
GWHAAZE00000007exon49696814969866+
GWHAAZE00000007CDS49689244969283+
GWHAAZE00000007CDS49696814969866+
Transcript Sequence

Network for GWHGAAZE023311

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02897RP-L25, rplY Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0008097molecular_function5S rRNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE023311.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 302.557.51012.51517.52022.52527.53032.5Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.804
SRR3591706second leaf3.311
SRR3591707mature leaf3.669
SRR3591708Shoot apex9.629
SRR3591709Stem6.046
SRR3591710White floral bud4.938
SRR3591711White flower4.164
SRR3591712Green floral bud5.885
SRR3591713Yellow flower3.416
SRP173429 SRR8316895Juvenile bud stage 8.391
SRR8316896Juvenile bud stage 12.341
SRR8316897Juvenile bud stage 6.796
SRR8316894Third green stage 6.481
SRR8316900Third green stage 17.034
SRR8316901Third green stage 16.273
SRR8316898Complete white stage 4.440
SRR8316899Complete white stage 17.431
SRR8316903Complete white stage 7.309
SRR8316902Silver flowering stage6.160
SRR8316904Silver flowering stage5.394
SRR8316905Silver flowering stage2.727
SRR8316906Gold flowering stage 9.160
SRR8316907Gold flowering stage 4.745
SRR8316908Gold flowering stage 8.221
SRP132670SRR6706286Control15.828
SRR6706287Light intensity 50%15.525
SRR6706288Light intensity 20%18.021
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.652
CNS0095593Slightly white alabastrum(diploid) 28.953
CNS0095594Slightly white alabastrum(diploid) 312.695
CNS0095595Whole white alabastrum(diploid) 212.648
CNS0095596Whole white alabastrum(diploid) 310.726
CNS0095597Whole white alabastrum(diploid) 49.255
CNS0095598Silvery flower (diploied) 15.597
CNS0095599Silvery flower (diploied) 25.268
CNS0095600Silvery flower (diploied) 36.130
CNS0095601Golden flower (diploid) 13.966
CNS0095602Golden flower (diploid) 27.450
CNS0095603Golden flower (diploid) 37.536
CNS0095604Slightly white alabastrum(tetraploid) 130.193
CNS0095605Slightly white alabastrum(tetraploid) 224.547
CNS0095606Slightly white alabastrum(tetraploid) 330.171
CNS0095607Whole white alabastrum(tetraploid) 124.597
CNS0095608Whole white alabastrum(tetraploid) 216.912
CNS0095609Whole white alabastrum(tetraploid) 326.652
CNS0095610Silvery flower (tetraploid) 117.507
CNS0095611Silvery flower (tetraploid) 221.664
CNS0095612Silvery flower (tetraploid) 317.951
CNS0095613Golden flower (tetraploid) 19.380
CNS0095614Golden flower (tetraploid) 213.118
CNS0095615Golden flower (tetraploid) 311.170
CRA001975CRR073297Stem 115.386
CRR073298Stem 216.887
CRR073299Stem 321.981
CRR073300Leaf 120.873
CRR073301Leaf 218.597
CRR073302Leaf 320.213
CRR073303Juvenile bud 127.142
CRR073304Juvenile bud 219.339
CRR073305Juvenile bud 311.875
CRR073306Third green 17.451
CRR073307Third green 25.173
CRR073308Third green 34.921
CRR073309Second white 19.330
CRR073310Second white 210.494
CRR073311Second white 35.449
CRR073312Silver flowering 13.615
CRR073313Silver flowering 25.828
CRR073314Silver flowering 33.860
CRR073315Gold flowering 19.624
CRR073316Gold flowering 215.023
CRR073317Gold flowering 38.370
CRR073318Tawny withering 110.984
CRR073319Tawny withering 213.086
CRR073320Tawny withering 314.685