Detail information of GWHGAAZE023324


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009774046.12.12912E-90PREDICTED: LOB domain-containing protein 36-like [Nicotiana sylvestris]
Swissprottr|Q9FKZ3|LBD36_ARATH8E-79LOB domain-containing protein 36
trEMBLtr|M0ZJH4|M0ZJH4_SOLTU2E-88Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400002013}
TAIR10AT5G66870.17E-60ASYMMETRIC LEAVES 2-like 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene53922515393075-
GWHAAZE00000007mRNA53922515393075-
GWHAAZE00000007exon53922515393075-
GWHAAZE00000007CDS53922515393075-
Transcript Sequence

Network for GWHGAAZE023324

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB71038.50E-40
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.106
SRR3591707mature leaf0.005
SRR3591708Shoot apex3.322
SRR3591709Stem0.280
SRR3591710White floral bud1.364
SRR3591711White flower0.228
SRR3591712Green floral bud6.038
SRR3591713Yellow flower0.636
SRP173429 SRR8316895Juvenile bud stage 3.211
SRR8316896Juvenile bud stage 4.702
SRR8316897Juvenile bud stage 2.327
SRR8316894Third green stage 1.075
SRR8316900Third green stage 4.074
SRR8316901Third green stage 5.148
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.068
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.057
SRR8316904Silver flowering stage0.157
SRR8316905Silver flowering stage0.133
SRR8316906Gold flowering stage 0.177
SRR8316907Gold flowering stage 0.658
SRR8316908Gold flowering stage 0.404
SRP132670SRR6706286Control4.223
SRR6706287Light intensity 50%2.999
SRR6706288Light intensity 20%2.830
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.727
CNS0095593Slightly white alabastrum(diploid) 21.993
CNS0095594Slightly white alabastrum(diploid) 33.695
CNS0095595Whole white alabastrum(diploid) 25.789
CNS0095596Whole white alabastrum(diploid) 33.846
CNS0095597Whole white alabastrum(diploid) 44.566
CNS0095598Silvery flower (diploied) 10.265
CNS0095599Silvery flower (diploied) 20.841
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.057
CNS0095602Golden flower (diploid) 20.018
CNS0095603Golden flower (diploid) 30.209
CNS0095604Slightly white alabastrum(tetraploid) 11.175
CNS0095605Slightly white alabastrum(tetraploid) 20.461
CNS0095606Slightly white alabastrum(tetraploid) 30.201
CNS0095607Whole white alabastrum(tetraploid) 10.904
CNS0095608Whole white alabastrum(tetraploid) 21.392
CNS0095609Whole white alabastrum(tetraploid) 31.256
CNS0095610Silvery flower (tetraploid) 10.281
CNS0095611Silvery flower (tetraploid) 20.031
CNS0095612Silvery flower (tetraploid) 30.036
CNS0095613Golden flower (tetraploid) 10.196
CNS0095614Golden flower (tetraploid) 20.025
CNS0095615Golden flower (tetraploid) 30.116
CRA001975CRR073297Stem 13.104
CRR073298Stem 22.941
CRR073299Stem 34.193
CRR073300Leaf 11.972
CRR073301Leaf 22.691
CRR073302Leaf 33.386
CRR073303Juvenile bud 11.879
CRR073304Juvenile bud 21.345
CRR073305Juvenile bud 30.498
CRR073306Third green 10.195
CRR073307Third green 20.059
CRR073308Third green 30.152
CRR073309Second white 10.085
CRR073310Second white 20.510
CRR073311Second white 30.130
CRR073312Silver flowering 10.966
CRR073313Silver flowering 20.364
CRR073314Silver flowering 30.209
CRR073315Gold flowering 10.199
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.096
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.160
CRR073320Tawny withering 30.000