Detail information of GWHGAAZE023325


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009600699.11.35882E-81PREDICTED: LOB domain-containing protein 36-like isoform X1 [Nicotiana tomentosiformis]
Swissprottr|Q9FKZ3|LBD36_ARATH9E-76LOB domain-containing protein 36
trEMBLtr|M0ZJH4|M0ZJH4_SOLTU2E-79Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400002013}
TAIR10AT5G66870.12E-61ASYMMETRIC LEAVES 2-like 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene54376475438461-
GWHAAZE00000007mRNA54376475438461-
GWHAAZE00000007exon54376475437901-
GWHAAZE00000007exon54379795438461-
GWHAAZE00000007CDS54379795438461-
GWHAAZE00000007CDS54376475437901-
Transcript Sequence

Network for GWHGAAZE023325

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB71031.40E-40
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf2.724
SRR3591707mature leaf0.565
SRR3591708Shoot apex5.696
SRR3591709Stem0.086
SRR3591710White floral bud2.494
SRR3591711White flower0.661
SRR3591712Green floral bud8.989
SRR3591713Yellow flower0.537
SRP173429 SRR8316895Juvenile bud stage 3.888
SRR8316896Juvenile bud stage 8.067
SRR8316897Juvenile bud stage 2.307
SRR8316894Third green stage 2.253
SRR8316900Third green stage 7.165
SRR8316901Third green stage 7.202
SRR8316898Complete white stage 0.883
SRR8316899Complete white stage 0.695
SRR8316903Complete white stage 0.570
SRR8316902Silver flowering stage0.470
SRR8316904Silver flowering stage0.229
SRR8316905Silver flowering stage0.120
SRR8316906Gold flowering stage 0.835
SRR8316907Gold flowering stage 1.364
SRR8316908Gold flowering stage 0.313
SRP132670SRR6706286Control7.027
SRR6706287Light intensity 50%6.415
SRR6706288Light intensity 20%5.688
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.320
CNS0095593Slightly white alabastrum(diploid) 22.830
CNS0095594Slightly white alabastrum(diploid) 37.149
CNS0095595Whole white alabastrum(diploid) 24.583
CNS0095596Whole white alabastrum(diploid) 38.286
CNS0095597Whole white alabastrum(diploid) 46.283
CNS0095598Silvery flower (diploied) 10.278
CNS0095599Silvery flower (diploied) 20.456
CNS0095600Silvery flower (diploied) 30.875
CNS0095601Golden flower (diploid) 10.217
CNS0095602Golden flower (diploid) 20.575
CNS0095603Golden flower (diploid) 30.160
CNS0095604Slightly white alabastrum(tetraploid) 17.472
CNS0095605Slightly white alabastrum(tetraploid) 25.751
CNS0095606Slightly white alabastrum(tetraploid) 30.622
CNS0095607Whole white alabastrum(tetraploid) 18.396
CNS0095608Whole white alabastrum(tetraploid) 28.318
CNS0095609Whole white alabastrum(tetraploid) 35.608
CNS0095610Silvery flower (tetraploid) 10.514
CNS0095611Silvery flower (tetraploid) 20.630
CNS0095612Silvery flower (tetraploid) 30.794
CNS0095613Golden flower (tetraploid) 11.084
CNS0095614Golden flower (tetraploid) 21.643
CNS0095615Golden flower (tetraploid) 30.665
CRA001975CRR073297Stem 18.357
CRR073298Stem 25.469
CRR073299Stem 36.320
CRR073300Leaf 15.001
CRR073301Leaf 25.586
CRR073302Leaf 36.267
CRR073303Juvenile bud 13.013
CRR073304Juvenile bud 28.472
CRR073305Juvenile bud 30.310
CRR073306Third green 11.701
CRR073307Third green 20.334
CRR073308Third green 31.698
CRR073309Second white 10.774
CRR073310Second white 22.242
CRR073311Second white 33.155
CRR073312Silver flowering 12.934
CRR073313Silver flowering 22.454
CRR073314Silver flowering 32.984
CRR073315Gold flowering 11.258
CRR073316Gold flowering 20.306
CRR073317Gold flowering 30.406
CRR073318Tawny withering 10.112
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.426