Detail information of GWHGAAZE023327


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009366785.14.11842E-22PREDICTED: uncharacterized protein LOC103956509 [Pyrus x bretschneideri]
trEMBLtr|F6HJU4|F6HJU4_VITVI5E-22Putative uncharacterized protein {ECO:0000313|EMBL:CCB54197.1} (Fragment)
TAIR10AT5G66860.12E-17Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene54502125450454+
GWHAAZE00000007mRNA54502125450454+
GWHAAZE00000007exon54502125450454+
GWHAAZE00000007CDS54502125450454+
Transcript Sequence

Network for GWHGAAZE023327

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0204


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14693.7Ribosomal_TL5_C3573.30E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02897RP-L25, rplY Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.918
SRR3591706second leaf10.051
SRR3591707mature leaf7.710
SRR3591708Shoot apex29.937
SRR3591709Stem12.778
SRR3591710White floral bud20.966
SRR3591711White flower17.954
SRR3591712Green floral bud27.964
SRR3591713Yellow flower15.086
SRP173429 SRR8316895Juvenile bud stage 24.141
SRR8316896Juvenile bud stage 35.341
SRR8316897Juvenile bud stage 11.904
SRR8316894Third green stage 12.070
SRR8316900Third green stage 43.144
SRR8316901Third green stage 42.559
SRR8316898Complete white stage 10.495
SRR8316899Complete white stage 47.762
SRR8316903Complete white stage 14.403
SRR8316902Silver flowering stage9.792
SRR8316904Silver flowering stage9.244
SRR8316905Silver flowering stage3.460
SRR8316906Gold flowering stage 18.019
SRR8316907Gold flowering stage 15.064
SRR8316908Gold flowering stage 15.254
SRP132670SRR6706286Control4.107
SRR6706287Light intensity 50%5.441
SRR6706288Light intensity 20%4.876
CNP0000432CNS0095592Slightly white alabastrum(diploid) 135.414
CNS0095593Slightly white alabastrum(diploid) 241.374
CNS0095594Slightly white alabastrum(diploid) 337.365
CNS0095595Whole white alabastrum(diploid) 228.000
CNS0095596Whole white alabastrum(diploid) 336.332
CNS0095597Whole white alabastrum(diploid) 425.351
CNS0095598Silvery flower (diploied) 121.390
CNS0095599Silvery flower (diploied) 218.796
CNS0095600Silvery flower (diploied) 318.814
CNS0095601Golden flower (diploid) 113.278
CNS0095602Golden flower (diploid) 213.662
CNS0095603Golden flower (diploid) 316.365
CNS0095604Slightly white alabastrum(tetraploid) 154.557
CNS0095605Slightly white alabastrum(tetraploid) 261.923
CNS0095606Slightly white alabastrum(tetraploid) 352.498
CNS0095607Whole white alabastrum(tetraploid) 145.188
CNS0095608Whole white alabastrum(tetraploid) 237.827
CNS0095609Whole white alabastrum(tetraploid) 348.434
CNS0095610Silvery flower (tetraploid) 131.282
CNS0095611Silvery flower (tetraploid) 232.159
CNS0095612Silvery flower (tetraploid) 325.741
CNS0095613Golden flower (tetraploid) 118.128
CNS0095614Golden flower (tetraploid) 225.465
CNS0095615Golden flower (tetraploid) 314.786
CRA001975CRR073297Stem 129.637
CRR073298Stem 222.629
CRR073299Stem 330.429
CRR073300Leaf 123.037
CRR073301Leaf 220.299
CRR073302Leaf 322.509
CRR073303Juvenile bud 125.835
CRR073304Juvenile bud 221.401
CRR073305Juvenile bud 315.995
CRR073306Third green 13.152
CRR073307Third green 23.103
CRR073308Third green 33.869
CRR073309Second white 110.341
CRR073310Second white 27.013
CRR073311Second white 36.571
CRR073312Silver flowering 16.892
CRR073313Silver flowering 24.178
CRR073314Silver flowering 35.475
CRR073315Gold flowering 116.998
CRR073316Gold flowering 218.507
CRR073317Gold flowering 314.064
CRR073318Tawny withering 112.898
CRR073319Tawny withering 217.777
CRR073320Tawny withering 327.874