Gene detail

Detail information of GWHGAAZE023345

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003635416.2	3.8351E-116	PREDICTED: phosphoglycerate mutase-like protein 4 [Vitis vinifera]
COG	YP_004684361.1	6E-40	phosphoglycerate mutase
Swissprot	tr\|Q9SCS3\|PGML4_ARATH	3E-110	Phosphoglycerate mutase-like protein 4 {ECO:0000305}
trEMBL	tr\|R0H5X8\|R0H5X8_9BRAS	2E-112	Uncharacterized protein {ECO:0000313\|EMBL:EOA24689.1}
TAIR10	AT3G50520.1	1E-90	Phosphoglycerate mutase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	5905674	5916741	+
GWHAAZE00000007	mRNA	5905674	5916741	+
GWHAAZE00000007	exon	5905674	5905693	+
GWHAAZE00000007	exon	5906442	5906517	+
GWHAAZE00000007	exon	5907496	5907546	+
GWHAAZE00000007	exon	5907619	5907729	+
GWHAAZE00000007	exon	5908735	5908866	+
GWHAAZE00000007	exon	5909093	5909168	+
GWHAAZE00000007	exon	5909242	5909460	+
GWHAAZE00000007	exon	5912240	5912432	+
GWHAAZE00000007	exon	5912879	5912972	+
GWHAAZE00000007	exon	5914099	5914149	+
GWHAAZE00000007	exon	5914225	5914335	+
GWHAAZE00000007	exon	5915031	5915162	+
GWHAAZE00000007	exon	5916408	5916483	+
GWHAAZE00000007	exon	5916566	5916741	+
GWHAAZE00000007	CDS	5905674	5905693	+
GWHAAZE00000007	CDS	5906442	5906517	+
GWHAAZE00000007	CDS	5907496	5907546	+
GWHAAZE00000007	CDS	5907619	5907729	+
GWHAAZE00000007	CDS	5908735	5908866	+
GWHAAZE00000007	CDS	5909093	5909168	+
GWHAAZE00000007	CDS	5909242	5909460	+
GWHAAZE00000007	CDS	5912240	5912432	+
GWHAAZE00000007	CDS	5912879	5912972	+
GWHAAZE00000007	CDS	5914099	5914149	+
GWHAAZE00000007	CDS	5914225	5914335	+
GWHAAZE00000007	CDS	5915031	5915162	+
GWHAAZE00000007	CDS	5916408	5916483	+
GWHAAZE00000007	CDS	5916566	5916741	+

Transcript Sequence
>GWHTAAZE023375 ATGGCAAATTCCGATTCCAGTGATGGTCCTGCTTATGCGGAGATTGTTGTAATACGTCATGGTGAGACAGAGTGGAATGCCGATGGCAGATTTCAGGGACATCTTGATGTTGAATTAAACGACATTGGGAGACATCAAGCAGCTGCAGTGGCTGAACGTCTATCCAAGGAACCCAAAATTTCTGCCGTATACTCATCTGAATTGAAACGAGCTTTTGAGACAGCACAGATAATAGCAAACAGCTGTGGCAGGCTTGAGGTTACTAAAGATCCGGACCTGAGGGAAAGACATTTAGGAGATCTTCAAGGTCTTGTATACAGTGACGCAATCAAAATCTGTCCCGAGGCACATCTAGCTCTTGTTTCTAGCAGGGCAGATCAAGAAATTCCTGGTGGTGGAGAAAGTCGTGATCAGGTTTATGAACGCTGCACATCGTTTTTGCAGAGAATTGGAAGCAAACATAAAGGAGAGAGAGTAGTAGTGGTCACCCATGGTGGTGTTATTAGATCACTTCACAAGCGAGCTACCCCAAGGGGACGGTCAGTAGGTAATATACTAAATACATCTGTCAATGTATTTCATTTGTCAGATGGGGATGAATGGACCATAGAAGCTTGGGGCGATGTTAGTCATCTCAACCAAATGGGATTCCTCAAGTCTGGTTTCGGTGGGGATGCTACGTCTGACCCGGATCCATATCCCTCCACTGCGTCCCCTAAAAGGCGCAGTACTCACCTGGCGCATCTAAGATCTCCTTTCCATAAAATCGTTGACTTGGTTGTCAGAGTCATGGTTCCAGACTATCATCTGGACATCAAAATATTCTCAGGAGTGCAGAACCTCACTAACTTACCTTCAATGACCAGTCCCGATTCTAGTAATGGCAAGTGTAGCTTTACTGATCCTGCTTATGCTGAGATTGTTGTCATACGCCACGGTGAAACAGAGTGGAACGCCAATGGCAGAATTCAGGGACATGCAGATATTGAATTAAATGAAGTTGGGAGGCAGCAAGCAGCTGCTGTGGCTGAACGTCTATCCAGGGAGCCTAAAATTTCTGCTGTATACTCGTCTGACTTGAAACGAGCTTTTGAGACAGCACAGATAATAGCAAACAGTTGTGGCAAGCTCAAGGTTATTAAAGATCCGGACCTGAGAGAAAGACATTTAGGAGATCTTCAAGGTCTTGTATACATTGAAGCAGTCAAAATATATCCCGAGATAGATGTCACTTTTGTATCTCAAACGGCAGATCGAGAAATCCCAGGTGGAGGAGAAACTCGTGATCAAGTTTATCAACGATGTACATCTTCATTGCAGAGAATTGGGAAAAAACACAAAGGAGAGCGCGTAGTTGTGGTCACTCATGGTGGCGTCATTAGAGCACTTCACAAGCGAGCCACTCCACAGGGACAGTCTGCAGGCGAATTACTAAATACATCTGTCAATGTATTTCAGTTATCAGATGGGGATGTCTGGACCGTAGGATCTTGGGACGATGTTTGTCATCTCAACTAA

Network for GWHGAAZE023345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0030

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00300.23	His_Phos_1	15	208	4.70E-57
PF00300.23	His_Phos_1	307	500	3.50E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15634	gpmB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.976
	SRR3591706	second leaf	0.952
	SRR3591707	mature leaf	1.210
	SRR3591708	Shoot apex	0.526
	SRR3591709	Stem	1.228
	SRR3591710	White floral bud	0.549
	SRR3591711	White flower	0.879
	SRR3591712	Green floral bud	1.319
	SRR3591713	Yellow flower	0.971
SRP173429	SRR8316895	Juvenile bud stage	1.915
	SRR8316896	Juvenile bud stage	3.300
	SRR8316897	Juvenile bud stage	0.248
	SRR8316894	Third green stage	1.051
	SRR8316900	Third green stage	2.939
	SRR8316901	Third green stage	2.998
	SRR8316898	Complete white stage	0.368
	SRR8316899	Complete white stage	4.503
	SRR8316903	Complete white stage	0.627
	SRR8316902	Silver flowering stage	0.618
	SRR8316904	Silver flowering stage	0.817
	SRR8316905	Silver flowering stage	0.558
	SRR8316906	Gold flowering stage	1.978
	SRR8316907	Gold flowering stage	1.606
	SRR8316908	Gold flowering stage	0.478
SRP132670	SRR6706286	Control	5.120
	SRR6706287	Light intensity 50%	5.244
	SRR6706288	Light intensity 20%	5.064
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.600
	CNS0095593	Slightly white alabastrum(diploid) 2	2.745
	CNS0095594	Slightly white alabastrum(diploid) 3	3.335
	CNS0095595	Whole white alabastrum(diploid) 2	2.177
	CNS0095596	Whole white alabastrum(diploid) 3	2.498
	CNS0095597	Whole white alabastrum(diploid) 4	3.068
	CNS0095598	Silvery flower (diploied) 1	0.613
	CNS0095599	Silvery flower (diploied) 2	1.311
	CNS0095600	Silvery flower (diploied) 3	0.965
	CNS0095601	Golden flower (diploid) 1	0.847
	CNS0095602	Golden flower (diploid) 2	0.697
	CNS0095603	Golden flower (diploid) 3	0.686
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.221
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.096
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.100
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.329
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.204
	CNS0095610	Silvery flower (tetraploid) 1	0.106
	CNS0095611	Silvery flower (tetraploid) 2	0.116
	CNS0095612	Silvery flower (tetraploid) 3	0.241
	CNS0095613	Golden flower (tetraploid) 1	0.148
	CNS0095614	Golden flower (tetraploid) 2	0.259
	CNS0095615	Golden flower (tetraploid) 3	0.060
CRA001975	CRR073297	Stem 1	3.217
	CRR073298	Stem 2	2.392
	CRR073299	Stem 3	1.269
	CRR073300	Leaf 1	3.383
	CRR073301	Leaf 2	3.059
	CRR073302	Leaf 3	1.756
	CRR073303	Juvenile bud 1	2.103
	CRR073304	Juvenile bud 2	2.292
	CRR073305	Juvenile bud 3	1.103
	CRR073306	Third green 1	1.093
	CRR073307	Third green 2	0.883
	CRR073308	Third green 3	0.723
	CRR073309	Second white 1	0.513
	CRR073310	Second white 2	0.517
	CRR073311	Second white 3	0.520
	CRR073312	Silver flowering 1	0.160
	CRR073313	Silver flowering 2	0.492
	CRR073314	Silver flowering 3	0.258
	CRR073315	Gold flowering 1	0.637
	CRR073316	Gold flowering 2	0.395
	CRR073317	Gold flowering 3	0.769
	CRR073318	Tawny withering 1	1.776
	CRR073319	Tawny withering 2	1.888
	CRR073320	Tawny withering 3	0.813