Gene detail

Detail information of GWHGAAZE023356

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003635416.2	2.6755E-103	PREDICTED: phosphoglycerate mutase-like protein 4 [Vitis vinifera]
COG	NP_518620.1	5E-39	phosphoglycerate mutase
Swissprot	tr\|Q9SCS3\|PGML4_ARATH	7E-94	Phosphoglycerate mutase-like protein 4 {ECO:0000305}
trEMBL	tr\|A0A068U1S8\|A0A068U1S8_COFCA	7E-99	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02476.1}
TAIR10	AT3G50520.1	3E-78	Phosphoglycerate mutase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	6137769	6150170	+
GWHAAZE00000007	mRNA	6137769	6150170	+
GWHAAZE00000007	exon	6137769	6137788	+
GWHAAZE00000007	exon	6138251	6138344	+
GWHAAZE00000007	exon	6139319	6139369	+
GWHAAZE00000007	exon	6139443	6139553	+
GWHAAZE00000007	exon	6140489	6140624	+
GWHAAZE00000007	exon	6140805	6141215	+
GWHAAZE00000007	exon	6145995	6146187	+
GWHAAZE00000007	exon	6146642	6146735	+
GWHAAZE00000007	exon	6147857	6147907	+
GWHAAZE00000007	exon	6147983	6148093	+
GWHAAZE00000007	exon	6148780	6148911	+
GWHAAZE00000007	exon	6149838	6149913	+
GWHAAZE00000007	exon	6149995	6150170	+
GWHAAZE00000007	CDS	6137769	6137788	+
GWHAAZE00000007	CDS	6138251	6138344	+
GWHAAZE00000007	CDS	6139319	6139369	+
GWHAAZE00000007	CDS	6139443	6139553	+
GWHAAZE00000007	CDS	6140489	6140624	+
GWHAAZE00000007	CDS	6140805	6141215	+
GWHAAZE00000007	CDS	6145995	6146187	+
GWHAAZE00000007	CDS	6146642	6146735	+
GWHAAZE00000007	CDS	6147857	6147907	+
GWHAAZE00000007	CDS	6147983	6148093	+
GWHAAZE00000007	CDS	6148780	6148911	+
GWHAAZE00000007	CDS	6149838	6149913	+
GWHAAZE00000007	CDS	6149995	6150170	+

Transcript Sequence
>GWHTAAZE023386 ATGGCCGATTCTGATTCTAGTAATGGCAAGCCTAGTTCTGATGGTCCTGCTTATGCGGAGATTGTTGTAATACGTCATGGTGAGACAGAGTGGAATGCCGATGGCAGAGTTCAGGGACATCTTGATGTTGAATTAAACGACGTTGGGAGACAGCAAGCAGCTGCAGTGGCTGAACGTCTATCCAAGGAGCCAAAAATTTCTGCCGTATACTCGTCTGACTTGAAACGAGCTTTTGAGACTGCACAGATAATAGCAAACAGCTGTGGCAGGTTTGAGGTTACTAAAGATCAGGACCTGAGGGAAAGACATTTAGGAGATCTTCAAGGTCTTGTATACAGTGATGCAATCAAAATCTGTCCCGAGGCACATCTAGCTCTTGTTTCTAGCAGGGCAGATCAAGAAATTCCTGCAAGCATGAACTCGATTTCTGATTTTCTAAATGATGACATGTGCAGGGTGGCGGAGAAAGTCGTGATCAGGTTTATCAACGCTGCACATCGTCTTTGCAGAGAATTGGAAGCAAACATAGAGGTATTGGTAGATTCAATGTCACAACGATACGAAAACCCGTGCACAAAAGTTAACACAGTTGTTCGAATTGCAGGAGAGAGAGTAGTAGTGGTCACCCATGGTGGTGTTATTAGATCACTTCACAAGCGAGCTACACCAAGGGGACGGTCAGCAGGGAAGATACTAAATACATCTGTCAATGTATTTCATTTGTCAGATGGGGATGAATGGACCATAGAAGCTTGGGGCGATGTTAGTCATCTCAACCAAATGGGATTCCTCAAGTCTGGTTTCGGCGGGGACGCTACTTCTGACCCGGATCCATATCCCTCCACTGCGTCCCCTAAAAAGCGCAGTACTCACCTGGCGCATCTAAGATCTCCTGTCCGTAAAATCGTTGACTTGGTTGTCAGAGTCGTGGTTCCAGACTATTATCTGGACATCAAAATATTCTCAGGAGTGCAGAGCCTCACTAACTTACCTTCAATGGCCAGTCCCGATTCTAGTAATGGCAAGTGTAGCTTTACTGAACCTGCTTATGCTGAGATTGTTGTCATACGCCACGGTGAAACAGAGTGGAACGCCGATGGCAGAATTCAGGGACATGTAGATATTGAATTAAATGAAGTTGGGAGGCAGCAAGCAGCTGCTGTGGCTGAACGTCTATCCAGGGAGCCTAAAATTTCTGCTGTATACTCGTCTGACTTGAAACGAGCTTTTGAGACAGCACAGATAATAGCAAAGAGTTGTGGCAAGCTCAAGGTTATTAAAGATCCGGACCTGAGAGAAAGACATTTAGGAGATCTTCAAGGTCTTGTATACATTGAAGCAGTCAAAATATATCCCGAGATAGATGTCACTTTTGTATCTCAAACGGCAGATCGAGAAATCCCAGGTGGTGGAGAAACTCGTGATCAAGTTTATCAACGATGTACATCTTCATTGCAGAGAATTGGGAAAAAACACAAAGGAGAGCGCGTAGTTGTGGTCACTCATGGTGGCATCATTAGAGCACTTCACAAGCGAGCCACTCCACAGGGACAGTCTGCAGGCGAATTACTAAATACATCTGTCAATGTATTTCAGTTATCGGATGGGGATGTCTGGACCGTAGGATCTTGGGACGATGTTTGTCATCTCAACTAA

Network for GWHGAAZE023356

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00300.23	His_Phos_1	21	145	5.60E-36
PF00300.23	His_Phos_1	200	254	1.50E-06
PF00300.23	His_Phos_1	353	546	7.20E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15634	gpmB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.731
	SRR3591706	second leaf	4.375
	SRR3591707	mature leaf	7.163
	SRR3591708	Shoot apex	4.783
	SRR3591709	Stem	5.199
	SRR3591710	White floral bud	8.582
	SRR3591711	White flower	9.388
	SRR3591712	Green floral bud	10.694
	SRR3591713	Yellow flower	9.815
SRP173429	SRR8316895	Juvenile bud stage	5.770
	SRR8316896	Juvenile bud stage	7.727
	SRR8316897	Juvenile bud stage	7.536
	SRR8316894	Third green stage	3.388
	SRR8316900	Third green stage	8.540
	SRR8316901	Third green stage	9.607
	SRR8316898	Complete white stage	2.138
	SRR8316899	Complete white stage	11.129
	SRR8316903	Complete white stage	4.195
	SRR8316902	Silver flowering stage	4.575
	SRR8316904	Silver flowering stage	4.594
	SRR8316905	Silver flowering stage	3.226
	SRR8316906	Gold flowering stage	9.643
	SRR8316907	Gold flowering stage	7.851
	SRR8316908	Gold flowering stage	10.118
SRP132670	SRR6706286	Control	14.497
	SRR6706287	Light intensity 50%	13.394
	SRR6706288	Light intensity 20%	14.456
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.896
	CNS0095593	Slightly white alabastrum(diploid) 2	7.082
	CNS0095594	Slightly white alabastrum(diploid) 3	7.298
	CNS0095595	Whole white alabastrum(diploid) 2	8.458
	CNS0095596	Whole white alabastrum(diploid) 3	6.953
	CNS0095597	Whole white alabastrum(diploid) 4	7.230
	CNS0095598	Silvery flower (diploied) 1	5.483
	CNS0095599	Silvery flower (diploied) 2	5.555
	CNS0095600	Silvery flower (diploied) 3	4.833
	CNS0095601	Golden flower (diploid) 1	4.597
	CNS0095602	Golden flower (diploid) 2	4.843
	CNS0095603	Golden flower (diploid) 3	4.726
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.302
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.814
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.804
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.754
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.488
	CNS0095610	Silvery flower (tetraploid) 1	13.653
	CNS0095611	Silvery flower (tetraploid) 2	10.518
	CNS0095612	Silvery flower (tetraploid) 3	12.084
	CNS0095613	Golden flower (tetraploid) 1	8.532
	CNS0095614	Golden flower (tetraploid) 2	11.810
	CNS0095615	Golden flower (tetraploid) 3	5.757
CRA001975	CRR073297	Stem 1	8.027
	CRR073298	Stem 2	6.023
	CRR073299	Stem 3	4.269
	CRR073300	Leaf 1	9.480
	CRR073301	Leaf 2	7.953
	CRR073302	Leaf 3	6.711
	CRR073303	Juvenile bud 1	7.305
	CRR073304	Juvenile bud 2	5.217
	CRR073305	Juvenile bud 3	6.472
	CRR073306	Third green 1	4.364
	CRR073307	Third green 2	2.370
	CRR073308	Third green 3	3.431
	CRR073309	Second white 1	3.365
	CRR073310	Second white 2	3.833
	CRR073311	Second white 3	3.387
	CRR073312	Silver flowering 1	2.103
	CRR073313	Silver flowering 2	2.257
	CRR073314	Silver flowering 3	2.560
	CRR073315	Gold flowering 1	5.273
	CRR073316	Gold flowering 2	6.131
	CRR073317	Gold flowering 3	2.751
	CRR073318	Tawny withering 1	4.063
	CRR073319	Tawny withering 2	3.984
	CRR073320	Tawny withering 3	2.527