Gene detail

Detail information of GWHGAAZE023379

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007047230.1	5.80421E-95	AP2/B3-like transcriptional factor family protein isoform 4 [Theobroma cacao]
Swissprot	tr\|Q0JP99\|Y1341_ORYSJ	8E-62	B3 domain-containing protein Os01g0234100
trEMBL	tr\|A0A061DGW8\|A0A061DGW8_THECC	2E-95	AP2/B3-like transcriptional factor family protein isoform 4 {ECO:0000313\|EMBL:EOX91387.1}
TAIR10	AT3G19184.1	1E-30	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	6849533	6853571	+
GWHAAZE00000007	mRNA	6849533	6853571	+
GWHAAZE00000007	exon	6849533	6849808	+
GWHAAZE00000007	exon	6851606	6851643	+
GWHAAZE00000007	exon	6851754	6851871	+
GWHAAZE00000007	exon	6851967	6852173	+
GWHAAZE00000007	exon	6852520	6852613	+
GWHAAZE00000007	exon	6853027	6853571	+
GWHAAZE00000007	CDS	6849533	6849808	+
GWHAAZE00000007	CDS	6851606	6851643	+
GWHAAZE00000007	CDS	6851754	6851871	+
GWHAAZE00000007	CDS	6851967	6852173	+
GWHAAZE00000007	CDS	6852520	6852613	+
GWHAAZE00000007	CDS	6853027	6853571	+

Transcript Sequence
>GWHTAAZE023409 ATGGCAGTGAACCCATTAACCAATTTTCTCAATCATCGTGCCGATTATGATGATGAACCGATGATACTTAAGAGAAAAATTGTTGAAGAAGAAGAGAATAATCACAAACAAGGTGGTAAAAGAAATTACTGCATTGACGACGATGATGAAGAAGCGGCGGTAATTAAGAGAGAAATTGTTGAAGAGGAGAAACAATGTACAAGTAAATACTACGTTATGATGAAAGACAAGAAGAAAACTAAGAACTCTTCCTCCAAATCAAAAAAGCATTCAAGTGGAAAACCAGGTTCAGCAGGGAAAGGAAAGTTTGTGAGGCAAGTCAAATCACCTGCTATGGTTCAAGCAGAAGATGTTCGGTCGAGTTTAGGAACTGAATCGCCTAGCTTTTTAAAGTTGGTGGTTCCTTCACATGTTGAGGGCAGCTTTTCCATGAGTCTTCCCGGGTCATTCTGTAGATCACACCTTCCGATAAACAACACTGTAATCATATTGGAGGATGAAAGGGAGGAACGATTTGAAGTAAAATACTTTTCAAAATGGACGGGACTGAGCGGCGGGTGGAGAAATTTTGCTGTCCAACACAAATTGCATGAAGGAGATGTTATAGTCTTCCATTTAGTTGCGCCCACCAGATTTAAGGTCTACATAGTAAGGGCTAATGATTCATCTGAGAGTGATGGTAATCCTAGAAGTCGTCTAGATTTGGACACACATGAGAAACAAAATGAACCAGGTGAAAATCTTGGTTATGACAACAATGAGGACACTGTGTGTAAAGGCCTCGAAACCATGGAAGACTTCAACATTATGCTAAATGGTTTGGGCTTGGAATATTCCGATCTCCATGAAAATATGCGAAAAAAGTTCTACGAGCTCTGTTGTAGCACAAATGCCATTCTTCATGATGGTCTTCTCCCCGGCCTCAATAGTAAGCTTATTGCTGGTGTAATTAGTGCAACTGTAACTATCGCAGACGCGATAAAAGCTTGTAACTTTGCTACCTCTCGAGATGAACTTGAGCAATGGGAAAAGTTACTGAAATCGTTCGATCTTCTGGGAATGAATGTTGGGTTTTTGCTTAACCGGCTAAGTCAGCTTCTAAGGCTGGTCTTCAAATCCAAACGTGCCAGCTTTGAAGATAAGATAAAGAATCTTGAAGTTAAGCGCGTAGAATTGAAGGAAGCTTATGAGAAGATTGATGGTGATATTGAGAAACTGAAGTCAAAAGCTGAGAGGCAGCATCTCAAGCTCCGGGAACTGGTTAATGCTCCTTGGTAA

Network for GWHGAAZE023379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	129	219	2.50E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.784
	SRR3591706	second leaf	2.795
	SRR3591707	mature leaf	2.371
	SRR3591708	Shoot apex	3.653
	SRR3591709	Stem	5.218
	SRR3591710	White floral bud	3.993
	SRR3591711	White flower	4.016
	SRR3591712	Green floral bud	4.641
	SRR3591713	Yellow flower	1.409
SRP173429	SRR8316895	Juvenile bud stage	3.461
	SRR8316896	Juvenile bud stage	2.773
	SRR8316897	Juvenile bud stage	1.441
	SRR8316894	Third green stage	1.303
	SRR8316900	Third green stage	4.527
	SRR8316901	Third green stage	3.536
	SRR8316898	Complete white stage	0.649
	SRR8316899	Complete white stage	5.742
	SRR8316903	Complete white stage	1.731
	SRR8316902	Silver flowering stage	0.457
	SRR8316904	Silver flowering stage	0.464
	SRR8316905	Silver flowering stage	0.292
	SRR8316906	Gold flowering stage	0.377
	SRR8316907	Gold flowering stage	0.537
	SRR8316908	Gold flowering stage	0.395
SRP132670	SRR6706286	Control	1.381
	SRR6706287	Light intensity 50%	0.888
	SRR6706288	Light intensity 20%	1.202
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.674
	CNS0095593	Slightly white alabastrum(diploid) 2	3.494
	CNS0095594	Slightly white alabastrum(diploid) 3	3.811
	CNS0095595	Whole white alabastrum(diploid) 2	2.716
	CNS0095596	Whole white alabastrum(diploid) 3	2.012
	CNS0095597	Whole white alabastrum(diploid) 4	1.773
	CNS0095598	Silvery flower (diploied) 1	5.534
	CNS0095599	Silvery flower (diploied) 2	2.111
	CNS0095600	Silvery flower (diploied) 3	1.780
	CNS0095601	Golden flower (diploid) 1	3.274
	CNS0095602	Golden flower (diploid) 2	2.699
	CNS0095603	Golden flower (diploid) 3	2.834
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.397
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.437
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.105
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.652
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.702
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.977
	CNS0095610	Silvery flower (tetraploid) 1	2.153
	CNS0095611	Silvery flower (tetraploid) 2	1.529
	CNS0095612	Silvery flower (tetraploid) 3	1.051
	CNS0095613	Golden flower (tetraploid) 1	0.526
	CNS0095614	Golden flower (tetraploid) 2	0.863
	CNS0095615	Golden flower (tetraploid) 3	0.292
CRA001975	CRR073297	Stem 1	1.929
	CRR073298	Stem 2	2.341
	CRR073299	Stem 3	1.560
	CRR073300	Leaf 1	2.748
	CRR073301	Leaf 2	2.592
	CRR073302	Leaf 3	0.676
	CRR073303	Juvenile bud 1	1.353
	CRR073304	Juvenile bud 2	0.817
	CRR073305	Juvenile bud 3	0.814
	CRR073306	Third green 1	0.208
	CRR073307	Third green 2	0.061
	CRR073308	Third green 3	0.123
	CRR073309	Second white 1	0.078
	CRR073310	Second white 2	0.255
	CRR073311	Second white 3	0.042
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.251
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.312
	CRR073316	Gold flowering 2	1.756
	CRR073317	Gold flowering 3	0.484
	CRR073318	Tawny withering 1	2.125
	CRR073319	Tawny withering 2	1.036
	CRR073320	Tawny withering 3	1.460