Gene detail

Detail information of GWHGAAZE023380

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02488.1	8.8262E-111	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q0JP99\|Y1341_ORYSJ	9E-58	B3 domain-containing protein Os01g0234100
trEMBL	tr\|A0A068U4F2\|A0A068U4F2_COFCA	3E-111	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02488.1}
TAIR10	AT3G19184.1	9E-21	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	6874253	6876899	+
GWHAAZE00000007	mRNA	6874253	6876899	+
GWHAAZE00000007	exon	6874253	6874290	+
GWHAAZE00000007	exon	6874383	6874542	+
GWHAAZE00000007	exon	6874637	6874843	+
GWHAAZE00000007	exon	6875035	6875125	+
GWHAAZE00000007	exon	6876017	6876899	+
GWHAAZE00000007	CDS	6874253	6874290	+
GWHAAZE00000007	CDS	6874383	6874542	+
GWHAAZE00000007	CDS	6874637	6874843	+
GWHAAZE00000007	CDS	6875035	6875125	+
GWHAAZE00000007	CDS	6876017	6876720	+
GWHAAZE00000007	three_prime_UTR	6876721	6876899	+

Transcript Sequence
>GWHTAAZE023410 GGAACACCGCGTTCAGCTGGAAAAGGAAAGTGTGTGAGTTGTCAGCTAGAAAATACTCCAAGTAATGGAATATGTGGTCCTGGGCAAGTCAAATCACCTGCTATGATTCAAGCAAAACATGTTCGATCGAGTTTAGGAACTGAATTGCCTAGCTTTTCAAAGTTGTTGGTTAGATCACATGTTGACAGCAATTCCATGAGTATTCCAGCGTCATTCTGTAGATCACACCTTCCAATAAACGACAGTGTAGTTGTATTGGTAGATGAAAGTGAGGAACAATTTGAAGTCAAATACTTCCCCAAATGGACGGGACTGAGTGGTGGGTGGAGAAGATTTTCCCTCCAACACAAGTTGAGTGAAGGAGATGTTTTAGTCTTCCAATTAGTTGCACCCAACAAATTTAAGGTGTACATAATAAGGGCTAATGGTTCGTCTGAGATCGATGGTGCTCCTAGTCTTGTAGATTTGGACGCACATGCAGAACATAATGAACCAGATGAAAATCTTGGTTCTGACAACAATGAGGACACACATACTACTGCTCTTAAGATGAAAAAGATGAAGTCTGTAAAGTCTTTCTCACAAACTGCAATCCAAAAGAAGAATAAGAAGGCACTACCAGAATCTGAAATTGACCACGAAGTTCGTGCAGAATTTTCGGAGTATTCAAATTCCTCAAAGCGCACAAATCCATGTAAAGGCCTCGAAACCTTAGAAGACTTCAACATTATGCTAAATGAATTGTGCGTGGAATATTCCGAACTCCAAGAAAATATGCGAAAAAAGTACTACGAGCTCTGTTGTAGTAAAAATGTCATTCTTCATGATGGTCTTCCCCCCAGCTTCAACAGTAAGCTGGTCGCTGGTATAATTGGTGAGACCGTAAATATTGCAGACGCAATAAAAGCTTGTAACTTTGCTACCTCTAAAGATGAACTTGAGCAATGGGAAAAGTCCTTGAAATCGTTCGAGCTTTTGGGAATGAATGTTGGGTTTTTGCTTGACCGGGTAAGTCAGCTTTTAAGGCTAGCGTCCGATTCCAATGGTGCCCCTTTTGAAGATGAGATAAAGAATCTTGAAGTTAAACGTGTAGAATTGAAAGAAGCTTATGAGAAGATTGGTGGTGATATTGAGAAACTGAAATCAAAAGCTGAGAGGCAGCATCTCAAGTTCCGGGAACTGGTTAATGCTCCTTGGTAATTAATAATTTATAGCATGTTAGCCTAGTTGTAATATAAAAAATTTTCTAAGTCTCTGGACTATGAAACAAGATGTAGGTTTATGAAGTTGAATTTGGGCACAAATCTTGCGGAATAATCAGTGTTGGAAAATGAATGGTGGAAATTGTTGCAATGAATTGTTATTTGGAGGATTTCTGA

Network for GWHGAAZE023380

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	52	141	9.70E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.665
	SRR3591706	second leaf	3.548
	SRR3591707	mature leaf	5.491
	SRR3591708	Shoot apex	9.652
	SRR3591709	Stem	6.925
	SRR3591710	White floral bud	10.012
	SRR3591711	White flower	10.444
	SRR3591712	Green floral bud	13.282
	SRR3591713	Yellow flower	10.656
SRP173429	SRR8316895	Juvenile bud stage	7.615
	SRR8316896	Juvenile bud stage	10.243
	SRR8316897	Juvenile bud stage	3.674
	SRR8316894	Third green stage	3.379
	SRR8316900	Third green stage	12.046
	SRR8316901	Third green stage	10.120
	SRR8316898	Complete white stage	3.186
	SRR8316899	Complete white stage	13.393
	SRR8316903	Complete white stage	4.170
	SRR8316902	Silver flowering stage	2.649
	SRR8316904	Silver flowering stage	3.669
	SRR8316905	Silver flowering stage	2.471
	SRR8316906	Gold flowering stage	5.662
	SRR8316907	Gold flowering stage	4.554
	SRR8316908	Gold flowering stage	6.028
SRP132670	SRR6706286	Control	1.271
	SRR6706287	Light intensity 50%	1.829
	SRR6706288	Light intensity 20%	1.860
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.328
	CNS0095593	Slightly white alabastrum(diploid) 2	7.464
	CNS0095594	Slightly white alabastrum(diploid) 3	8.575
	CNS0095595	Whole white alabastrum(diploid) 2	8.455
	CNS0095596	Whole white alabastrum(diploid) 3	6.086
	CNS0095597	Whole white alabastrum(diploid) 4	8.307
	CNS0095598	Silvery flower (diploied) 1	12.073
	CNS0095599	Silvery flower (diploied) 2	8.732
	CNS0095600	Silvery flower (diploied) 3	10.079
	CNS0095601	Golden flower (diploid) 1	9.296
	CNS0095602	Golden flower (diploid) 2	9.137
	CNS0095603	Golden flower (diploid) 3	8.106
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.618
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.133
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.770
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.600
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.083
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.625
	CNS0095610	Silvery flower (tetraploid) 1	8.662
	CNS0095611	Silvery flower (tetraploid) 2	9.421
	CNS0095612	Silvery flower (tetraploid) 3	6.778
	CNS0095613	Golden flower (tetraploid) 1	5.603
	CNS0095614	Golden flower (tetraploid) 2	7.823
	CNS0095615	Golden flower (tetraploid) 3	3.132
CRA001975	CRR073297	Stem 1	4.320
	CRR073298	Stem 2	3.752
	CRR073299	Stem 3	3.428
	CRR073300	Leaf 1	4.264
	CRR073301	Leaf 2	4.085
	CRR073302	Leaf 3	3.236
	CRR073303	Juvenile bud 1	2.350
	CRR073304	Juvenile bud 2	4.118
	CRR073305	Juvenile bud 3	3.574
	CRR073306	Third green 1	0.407
	CRR073307	Third green 2	0.597
	CRR073308	Third green 3	0.883
	CRR073309	Second white 1	1.834
	CRR073310	Second white 2	2.136
	CRR073311	Second white 3	1.016
	CRR073312	Silver flowering 1	2.228
	CRR073313	Silver flowering 2	0.811
	CRR073314	Silver flowering 3	1.074
	CRR073315	Gold flowering 1	3.569
	CRR073316	Gold flowering 2	4.578
	CRR073317	Gold flowering 3	1.603
	CRR073318	Tawny withering 1	5.259
	CRR073319	Tawny withering 2	4.837
	CRR073320	Tawny withering 3	2.678