Gene detail

Detail information of GWHGAAZE023393

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652805.1	0	PREDICTED: nicotinate phosphoribosyltransferase isoform X1 [Vitis vinifera]
COG	YP_003089277.1	1E-74	nicotinate phosphoribosyltransferase
trEMBL	tr\|F6H4J6\|F6H4J6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47060.1}
TAIR10	AT4G36940.1	4E-142	nicotinate phosphoribosyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7065146	7076758	-
GWHAAZE00000007	mRNA	7065146	7076758	-
GWHAAZE00000007	exon	7076595	7076758	-
GWHAAZE00000007	exon	7072351	7072498	-
GWHAAZE00000007	exon	7071416	7071535	-
GWHAAZE00000007	exon	7070684	7070818	-
GWHAAZE00000007	exon	7070541	7070602	-
GWHAAZE00000007	exon	7066447	7066522	-
GWHAAZE00000007	exon	7065373	7065474	-
GWHAAZE00000007	exon	7065146	7065274	-
GWHAAZE00000007	CDS	7076595	7076758	-
GWHAAZE00000007	CDS	7072351	7072498	-
GWHAAZE00000007	CDS	7071416	7071535	-
GWHAAZE00000007	CDS	7070684	7070818	-
GWHAAZE00000007	CDS	7070541	7070602	-
GWHAAZE00000007	CDS	7066447	7066522	-
GWHAAZE00000007	CDS	7065373	7065474	-
GWHAAZE00000007	CDS	7065146	7065274	-

Transcript Sequence
>GWHTAAZE023423 ATGAATACTAATAGCAAAGGTAAAGGCCCCAAAGGCGGTGAGAATCGGCGTCCGGTTATACAGGGACCTACCAATTCAATGGTGACACCTCTCCTTACAGATCTCTATCAGTTTACTATGGCTTATGCTTACTGGAAAGCCGGCAAGCATAACGAACGAGCTGTCTTCGATTTATATTTCCGAAAGAACCCTTTTGGTGGAGAGTATACGGTTTTTGCTGGTATAGAGGAATGCATAAGGTTCATTGCCAATTTTAAATTTACAGAGGAAGATATTGCTTTTATCCAGGCATCGTTGTCTCCCACATGTGAGGCTGGGTTCTATGATTATCTTAGAGGAATTGATTGCTCCGATGTTGAAGTATATGCGATTTCGGAGGGATCTGTTGTCTTCCCAAAAGTACCCTTGATGAGGGTTGAAGGCCCAACCGCAGTGGTTCAACTGCTGGAAACTCAATTTGTAAATCTTATAAATTATGCATCACTTGTTGCTACCAATGCTGCAAGACATCGTTTTGTTGCTGGAAAGTCCAAACTTCTTTTGGAGTTTGGGCTTCGTCGGGCACAGGGTCCTGATGGTGGAATAAGTGCATCGAAGTATTGTTACATTGGAGGATTTGATGCGACGAGCAATGTTGCAGCGGGACAATTATTTGGAATACCACTCCGTGGAACACATTCCCATGCTTTTGTCAGCTCATTCATGGGCACTGATGAGATCACAGACAAATCCCTCCGTAGTTGTGATGGCAAGAGTGTTTGCAAGGATTTTGTTAGTCTGGCGCAGATATGGTTAAGCAAAATAAAGCGGGCAAGTTTGTTAATTGGAATTTTTGGTGAGACCAATCAGAGTGAGCTTGCAGCTTTCATCTCATATGCCCTGGCATTCCCCAATTCCTTTCTAGCTCTTGTAGACACATATGATGTAAGAGTTTGA

Network for GWHGAAZE023393

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17767.2	NAPRTase_N	31	158	7.90E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00763	pncB, NAPRT1	Metabolic pathways	map01100
K00763	pncB, NAPRT1	Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0009435	biological_process	NAD biosynthetic process
GO:0004514	molecular_function	nicotinate-nucleotide diphosphorylase (carboxylating) activity
GO:0003824	molecular_function	catalytic activity
GO:0004516	molecular_function	nicotinate phosphoribosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.030
	SRR3591706	second leaf	24.667
	SRR3591707	mature leaf	23.612
	SRR3591708	Shoot apex	17.427
	SRR3591709	Stem	14.916
	SRR3591710	White floral bud	24.935
	SRR3591711	White flower	19.579
	SRR3591712	Green floral bud	22.066
	SRR3591713	Yellow flower	19.302
SRP173429	SRR8316895	Juvenile bud stage	12.917
	SRR8316896	Juvenile bud stage	21.419
	SRR8316897	Juvenile bud stage	8.831
	SRR8316894	Third green stage	11.145
	SRR8316900	Third green stage	35.028
	SRR8316901	Third green stage	29.776
	SRR8316898	Complete white stage	15.939
	SRR8316899	Complete white stage	41.108
	SRR8316903	Complete white stage	28.516
	SRR8316902	Silver flowering stage	11.824
	SRR8316904	Silver flowering stage	15.521
	SRR8316905	Silver flowering stage	8.569
	SRR8316906	Gold flowering stage	33.605
	SRR8316907	Gold flowering stage	29.104
	SRR8316908	Gold flowering stage	26.369
SRP132670	SRR6706286	Control	39.394
	SRR6706287	Light intensity 50%	44.119
	SRR6706288	Light intensity 20%	46.728
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.302
	CNS0095593	Slightly white alabastrum(diploid) 2	10.510
	CNS0095594	Slightly white alabastrum(diploid) 3	12.554
	CNS0095595	Whole white alabastrum(diploid) 2	14.638
	CNS0095596	Whole white alabastrum(diploid) 3	13.898
	CNS0095597	Whole white alabastrum(diploid) 4	7.963
	CNS0095598	Silvery flower (diploied) 1	8.309
	CNS0095599	Silvery flower (diploied) 2	6.423
	CNS0095600	Silvery flower (diploied) 3	15.757
	CNS0095601	Golden flower (diploid) 1	5.545
	CNS0095602	Golden flower (diploid) 2	14.950
	CNS0095603	Golden flower (diploid) 3	13.576
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.305
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.811
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.947
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.908
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.338
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.063
	CNS0095610	Silvery flower (tetraploid) 1	21.805
	CNS0095611	Silvery flower (tetraploid) 2	22.691
	CNS0095612	Silvery flower (tetraploid) 3	27.536
	CNS0095613	Golden flower (tetraploid) 1	11.894
	CNS0095614	Golden flower (tetraploid) 2	19.243
	CNS0095615	Golden flower (tetraploid) 3	18.712
CRA001975	CRR073297	Stem 1	19.407
	CRR073298	Stem 2	18.961
	CRR073299	Stem 3	17.702
	CRR073300	Leaf 1	36.847
	CRR073301	Leaf 2	22.015
	CRR073302	Leaf 3	22.945
	CRR073303	Juvenile bud 1	29.851
	CRR073304	Juvenile bud 2	29.884
	CRR073305	Juvenile bud 3	30.946
	CRR073306	Third green 1	21.173
	CRR073307	Third green 2	13.930
	CRR073308	Third green 3	17.776
	CRR073309	Second white 1	8.731
	CRR073310	Second white 2	16.075
	CRR073311	Second white 3	14.649
	CRR073312	Silver flowering 1	13.870
	CRR073313	Silver flowering 2	9.803
	CRR073314	Silver flowering 3	8.747
	CRR073315	Gold flowering 1	7.575
	CRR073316	Gold flowering 2	10.652
	CRR073317	Gold flowering 3	6.325
	CRR073318	Tawny withering 1	7.940
	CRR073319	Tawny withering 2	5.389
	CRR073320	Tawny withering 3	10.980