Gene detail

Detail information of GWHGAAZE023403

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008238914.1	8.1711E-138	PREDICTED: probable WRKY transcription factor 7 [Prunus mume]
Swissprot	tr\|Q9STX0\|WRKY7_ARATH	5E-94	Probable WRKY transcription factor 7
trEMBL	tr\|M5W056\|M5W056_PRUPE	4E-138	Uncharacterized protein {ECO:0000313\|EMBL:EMJ06751.1}
TAIR10	AT4G24240.1	1E-60	WRKY DNA-binding protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7477093	7478672	-
GWHAAZE00000007	mRNA	7477093	7478672	-
GWHAAZE00000007	exon	7477960	7478672	-
GWHAAZE00000007	exon	7477619	7477744	-
GWHAAZE00000007	exon	7477093	7477228	-
GWHAAZE00000007	CDS	7477960	7478672	-
GWHAAZE00000007	CDS	7477619	7477744	-
GWHAAZE00000007	CDS	7477093	7477228	-

Transcript Sequence
>GWHTAAZE023433 ATGGCTGTGGAACTCATGATGAGTAATTACAGGAACGATAACTTCGTCAACAAAGTCGAAGACAACGCAGTGCAAGAAGCTGCTTCCGGTCTTCAAAGCGTCGAAAAACTCATAAAAATGCTATCAAATTCGGAGCAGAACCAGGGATCTTCGTCTTCAATGGAGGATTTAGAAATGGACTGTAGATCTGTCGCTACCGTTGCTGTAACGAAGTTTAAGAAAGTCATCTCTCTTCTAAATCGAACCAGAACCGGCCATGCTCGCTTTCGTAGAGCTCCTGTACCTACTACTGCTGTCGCCAATTCTGCTCAAAAAAATAATTATAATACTGAAATTAAAGAGCCTAATGAAGTTATTTCTGAAACTAAAGTTTATTGTCCAACTCCTATTCAACAAGTTCCTCTTATTGTTCAGTATCAGCCTGAGAATCATTTGTTGAAGGAATCGGGATCAAAAACTATCAGTTTCGCGTACTCGCCGGCGATTTCACGTGCGAACTCGTTTGTATCGACGTTAACAGGCGAATCGGATAGCAAGAGGCCTGGTTCGTCGGCATTTCAGATTTGTAATCTCTCTCGGAATGTTTCTTCCGATAAACCGCCGTTGTCTTCTTCGACGACGTCGTTGAAGAGGAAGTGTAGCTCCTCTGGAACCGCCGCCTCTGGTAAATGCAGCGGTGGCTCCTCCGGTCGCTGCCACTGTTCCAAGCGGAGAAAGCTGCGAATGAAGAGAGTAATTAGGGTTCCGGCAATAAGCATGAAGCTAGCTGACATACCACCGGATGATTACTCATGGAGGAAGTACGGACAGAAACCAATTAAAGGATCTCCACATCCAAGGGGATATTACAAGTGCAGTAGTGTGAGAGGCTGCCCAGCTCGTAAACATGTGGAGAGAGCATTAGATGATGCAACCATGCTGATTGTGACCTATGAAGGCGAGCATAACCATAATCTCTCTCTTGCTGAAACTTCT

Network for GWHGAAZE023403

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10533.10	Plant_zn_clust	210	257	1.10E-18
PF03106.16	WRKY	261	318	1.20E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.717
	SRR3591706	second leaf	24.589
	SRR3591707	mature leaf	26.528
	SRR3591708	Shoot apex	56.581
	SRR3591709	Stem	81.163
	SRR3591710	White floral bud	43.507
	SRR3591711	White flower	57.375
	SRR3591712	Green floral bud	30.577
	SRR3591713	Yellow flower	75.745
SRP173429	SRR8316895	Juvenile bud stage	16.572
	SRR8316896	Juvenile bud stage	18.908
	SRR8316897	Juvenile bud stage	11.030
	SRR8316894	Third green stage	8.630
	SRR8316900	Third green stage	18.565
	SRR8316901	Third green stage	22.708
	SRR8316898	Complete white stage	14.093
	SRR8316899	Complete white stage	74.939
	SRR8316903	Complete white stage	22.119
	SRR8316902	Silver flowering stage	15.140
	SRR8316904	Silver flowering stage	27.214
	SRR8316905	Silver flowering stage	10.541
	SRR8316906	Gold flowering stage	29.245
	SRR8316907	Gold flowering stage	27.420
	SRR8316908	Gold flowering stage	28.437
SRP132670	SRR6706286	Control	33.596
	SRR6706287	Light intensity 50%	31.524
	SRR6706288	Light intensity 20%	29.933
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.496
	CNS0095593	Slightly white alabastrum(diploid) 2	20.790
	CNS0095594	Slightly white alabastrum(diploid) 3	20.136
	CNS0095595	Whole white alabastrum(diploid) 2	18.103
	CNS0095596	Whole white alabastrum(diploid) 3	7.338
	CNS0095597	Whole white alabastrum(diploid) 4	9.613
	CNS0095598	Silvery flower (diploied) 1	16.485
	CNS0095599	Silvery flower (diploied) 2	14.949
	CNS0095600	Silvery flower (diploied) 3	30.386
	CNS0095601	Golden flower (diploid) 1	19.874
	CNS0095602	Golden flower (diploid) 2	39.223
	CNS0095603	Golden flower (diploid) 3	37.117
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.663
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.171
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.140
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.638
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.474
	CNS0095610	Silvery flower (tetraploid) 1	11.470
	CNS0095611	Silvery flower (tetraploid) 2	15.672
	CNS0095612	Silvery flower (tetraploid) 3	15.550
	CNS0095613	Golden flower (tetraploid) 1	11.412
	CNS0095614	Golden flower (tetraploid) 2	16.068
	CNS0095615	Golden flower (tetraploid) 3	24.299
CRA001975	CRR073297	Stem 1	45.769
	CRR073298	Stem 2	41.987
	CRR073299	Stem 3	45.233
	CRR073300	Leaf 1	70.245
	CRR073301	Leaf 2	54.677
	CRR073302	Leaf 3	66.807
	CRR073303	Juvenile bud 1	60.938
	CRR073304	Juvenile bud 2	68.117
	CRR073305	Juvenile bud 3	70.939
	CRR073306	Third green 1	13.375
	CRR073307	Third green 2	19.420
	CRR073308	Third green 3	21.655
	CRR073309	Second white 1	10.519
	CRR073310	Second white 2	9.541
	CRR073311	Second white 3	6.075
	CRR073312	Silver flowering 1	9.877
	CRR073313	Silver flowering 2	9.224
	CRR073314	Silver flowering 3	9.392
	CRR073315	Gold flowering 1	51.060
	CRR073316	Gold flowering 2	81.092
	CRR073317	Gold flowering 3	76.155
	CRR073318	Tawny withering 1	147.915
	CRR073319	Tawny withering 2	107.611
	CRR073320	Tawny withering 3	91.268