Detail information of GWHGAAZE023410


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009799715.10PREDICTED: F-box protein At1g47056-like [Nicotiana sylvestris]
Swissprottr|Q9C626|FB37_ARATH0F-box protein At1g47056
trEMBLtr|Q84QE1|Q84QE1_TOBAC0Avr9/Cf-9 rapidly elicited protein 189 {ECO:0000313|EMBL:AAP03878.1}
TAIR10AT1G47056.14E-162VIER F-box proteine 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene76311137632807-
GWHAAZE00000007mRNA76311137632807-
GWHAAZE00000007exon76311137632807-
GWHAAZE00000007CDS76311137632807-
Transcript Sequence

Network for GWHGAAZE023410

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box751052.70E-06
PF13516.7LRR_61641870.1
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.193
SRR3591706second leaf5.567
SRR3591707mature leaf4.615
SRR3591708Shoot apex8.871
SRR3591709Stem28.230
SRR3591710White floral bud13.232
SRR3591711White flower17.235
SRR3591712Green floral bud9.798
SRR3591713Yellow flower22.199
SRP173429 SRR8316895Juvenile bud stage 18.981
SRR8316896Juvenile bud stage 12.122
SRR8316897Juvenile bud stage 8.299
SRR8316894Third green stage 8.353
SRR8316900Third green stage 15.281
SRR8316901Third green stage 16.709
SRR8316898Complete white stage 7.491
SRR8316899Complete white stage 30.275
SRR8316903Complete white stage 10.737
SRR8316902Silver flowering stage6.609
SRR8316904Silver flowering stage9.943
SRR8316905Silver flowering stage5.264
SRR8316906Gold flowering stage 30.645
SRR8316907Gold flowering stage 23.565
SRR8316908Gold flowering stage 25.238
SRP132670SRR6706286Control13.087
SRR6706287Light intensity 50%15.932
SRR6706288Light intensity 20%14.497
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.920
CNS0095593Slightly white alabastrum(diploid) 213.953
CNS0095594Slightly white alabastrum(diploid) 315.599
CNS0095595Whole white alabastrum(diploid) 212.954
CNS0095596Whole white alabastrum(diploid) 37.614
CNS0095597Whole white alabastrum(diploid) 46.928
CNS0095598Silvery flower (diploied) 127.278
CNS0095599Silvery flower (diploied) 222.430
CNS0095600Silvery flower (diploied) 324.993
CNS0095601Golden flower (diploid) 123.819
CNS0095602Golden flower (diploid) 234.065
CNS0095603Golden flower (diploid) 334.231
CNS0095604Slightly white alabastrum(tetraploid) 15.037
CNS0095605Slightly white alabastrum(tetraploid) 24.984
CNS0095606Slightly white alabastrum(tetraploid) 39.658
CNS0095607Whole white alabastrum(tetraploid) 14.467
CNS0095608Whole white alabastrum(tetraploid) 23.330
CNS0095609Whole white alabastrum(tetraploid) 36.887
CNS0095610Silvery flower (tetraploid) 19.297
CNS0095611Silvery flower (tetraploid) 26.115
CNS0095612Silvery flower (tetraploid) 316.266
CNS0095613Golden flower (tetraploid) 111.057
CNS0095614Golden flower (tetraploid) 212.363
CNS0095615Golden flower (tetraploid) 315.541
CRA001975CRR073297Stem 114.326
CRR073298Stem 218.921
CRR073299Stem 317.923
CRR073300Leaf 134.925
CRR073301Leaf 236.123
CRR073302Leaf 325.250
CRR073303Juvenile bud 129.710
CRR073304Juvenile bud 228.385
CRR073305Juvenile bud 347.365
CRR073306Third green 129.083
CRR073307Third green 222.304
CRR073308Third green 327.559
CRR073309Second white 129.017
CRR073310Second white 230.977
CRR073311Second white 326.696
CRR073312Silver flowering 167.144
CRR073313Silver flowering 262.411
CRR073314Silver flowering 350.699
CRR073315Gold flowering 19.560
CRR073316Gold flowering 213.811
CRR073317Gold flowering 314.078
CRR073318Tawny withering 119.889
CRR073319Tawny withering 234.659
CRR073320Tawny withering 325.383