Gene detail

Detail information of GWHGAAZE023411

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAE80325.1	1.3762E-138	cyclin D3-2 [Camellia sinensis]
Swissprot	tr\|Q9FGQ7\|CCD32_ARATH	8E-98	Cyclin-D3-2
trEMBL	tr\|Q2ABE6\|Q2ABE6_CAMSI	5E-139	Cyclin D3-2 {ECO:0000313\|EMBL:BAE80325.1}
TAIR10	AT5G67260.1	4E-81	CYCLIN D3;2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7664491	7666240	+
GWHAAZE00000007	mRNA	7664491	7666240	+
GWHAAZE00000007	exon	7664491	7664973	+
GWHAAZE00000007	exon	7665096	7665297	+
GWHAAZE00000007	exon	7665773	7665903	+
GWHAAZE00000007	exon	7666010	7666240	+
GWHAAZE00000007	CDS	7664491	7664973	+
GWHAAZE00000007	CDS	7665096	7665297	+
GWHAAZE00000007	CDS	7665773	7665903	+
GWHAAZE00000007	CDS	7666010	7666240	+

Transcript Sequence
>GWHTAAZE023441 ATGAGTAAACCCTCTTGTGTCTTCTTCTTAGAAGAAGAACAAAATGCCTTCCCAAAATCCTCCTTTTCTCTGGATGGTAATGGTCTCTATTGTGAAGAACAAGATCTGGGTGGATTTGATTTTGAGGGAGAGAATGAGAATTTTTGTGGGTTTTTAGAGCTTGATTTGATTTGGGAAAATGATGAGTTAGTTTCTTTGTTAGATAAAGAACAGGGGATTTGTTTGGGTAGTAAAGACTTGAGTTCTAATGAGTCTTTAATGGCGGTTAGAGGTGATGCAATTGATTGGATTTTGAGGGTTAGTGGGCACTATGGATTTGGTGCTATTACTGTTGTTTTGGCTGTTAATTACTTTGATAGGTTCCTATTAAGCCCTTGTTTTGAGAAAGAGAAGCCATGGATGAGTCAACTAGCTGCTGTTGCTTGCATTTCCATAGCTGCTAAAGTTGAGGAGACCAAACTCCATCTTCTTTTAGACCTGCAAGTGGAGGAAGCAAAGTTTGTTTTTGAGCCTAAAACCATTATGCGAATGGAACTTTTGGTGCTGTCAACTCTTCAGTGGAAGATGAACCCTGTGACTCCAATTTCATTTCTAGATCACTTCATAAGGAGGTTTGGATTGAAAACCCACCTACATTTGGAGTTCATAAGGAGGTGTGAACGTGTCCTCCTCTCTATCATCACTGATCCAAGGTTTCTGTGCTATCTACCTTCTGTCATAGCTGCTGCGACTATAACTCTTGTTATAGAAGAGGTTGAGCCTTGTAATGCATTGGAATATCAGAATCAGCTTATGTGTATCCTCAAAATCAGCAAGGAAAAACTTGATACCTGCTATAAACTCATCCTTGAACGGTTGGACAGTCACACTTATTTACAATACCAAGCCCCCAAGCGCAAATACGAGTCTATGCCCGGTAGTCCCAATGGCGTTATTGATGCATATTTCAGTTGTGATAGCTCAAATGATTCGTGGGCTGTGGCATTACTGGTAAATTCTTCACCAGAACCTCCGTTTAAGAAGAGCAGGCTCGGGATCAACATATGA

Network for GWHGAAZE023411

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.24	Cyclin_N	87	190	2.30E-23
PF02984.20	Cyclin_C	192	303	9.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14505	CYCD3	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.509
	SRR3591706	second leaf	11.653
	SRR3591707	mature leaf	2.253
	SRR3591708	Shoot apex	39.011
	SRR3591709	Stem	1.744
	SRR3591710	White floral bud	8.686
	SRR3591711	White flower	5.029
	SRR3591712	Green floral bud	9.606
	SRR3591713	Yellow flower	0.857
SRP173429	SRR8316895	Juvenile bud stage	10.644
	SRR8316896	Juvenile bud stage	13.179
	SRR8316897	Juvenile bud stage	3.048
	SRR8316894	Third green stage	4.060
	SRR8316900	Third green stage	7.229
	SRR8316901	Third green stage	5.202
	SRR8316898	Complete white stage	1.812
	SRR8316899	Complete white stage	8.239
	SRR8316903	Complete white stage	1.960
	SRR8316902	Silver flowering stage	1.508
	SRR8316904	Silver flowering stage	2.134
	SRR8316905	Silver flowering stage	0.903
	SRR8316906	Gold flowering stage	1.998
	SRR8316907	Gold flowering stage	1.395
	SRR8316908	Gold flowering stage	1.569
SRP132670	SRR6706286	Control	1.849
	SRR6706287	Light intensity 50%	2.186
	SRR6706288	Light intensity 20%	2.418
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.903
	CNS0095593	Slightly white alabastrum(diploid) 2	8.525
	CNS0095594	Slightly white alabastrum(diploid) 3	15.016
	CNS0095595	Whole white alabastrum(diploid) 2	10.102
	CNS0095596	Whole white alabastrum(diploid) 3	8.301
	CNS0095597	Whole white alabastrum(diploid) 4	8.757
	CNS0095598	Silvery flower (diploied) 1	13.169
	CNS0095599	Silvery flower (diploied) 2	12.028
	CNS0095600	Silvery flower (diploied) 3	4.741
	CNS0095601	Golden flower (diploid) 1	9.373
	CNS0095602	Golden flower (diploid) 2	6.385
	CNS0095603	Golden flower (diploid) 3	4.767
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.969
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.312
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.729
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.838
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.789
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.546
	CNS0095610	Silvery flower (tetraploid) 1	0.609
	CNS0095611	Silvery flower (tetraploid) 2	5.260
	CNS0095612	Silvery flower (tetraploid) 3	2.090
	CNS0095613	Golden flower (tetraploid) 1	0.154
	CNS0095614	Golden flower (tetraploid) 2	0.371
	CNS0095615	Golden flower (tetraploid) 3	0.262
CRA001975	CRR073297	Stem 1	7.035
	CRR073298	Stem 2	6.420
	CRR073299	Stem 3	6.782
	CRR073300	Leaf 1	3.976
	CRR073301	Leaf 2	3.838
	CRR073302	Leaf 3	3.400
	CRR073303	Juvenile bud 1	2.504
	CRR073304	Juvenile bud 2	2.539
	CRR073305	Juvenile bud 3	2.552
	CRR073306	Third green 1	1.187
	CRR073307	Third green 2	0.771
	CRR073308	Third green 3	1.698
	CRR073309	Second white 1	0.644
	CRR073310	Second white 2	0.963
	CRR073311	Second white 3	0.676
	CRR073312	Silver flowering 1	0.407
	CRR073313	Silver flowering 2	0.998
	CRR073314	Silver flowering 3	0.333
	CRR073315	Gold flowering 1	2.011
	CRR073316	Gold flowering 2	2.203
	CRR073317	Gold flowering 3	3.010
	CRR073318	Tawny withering 1	6.705
	CRR073319	Tawny withering 2	8.082
	CRR073320	Tawny withering 3	7.038