Gene detail

Detail information of GWHGAAZE023418

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283356.1	0	PREDICTED: cinnamyl alcohol dehydrogenase 1 [Vitis vinifera]
COG	YP_003897964.1	2E-95	alcohol dehydrogenase
Swissprot	tr\|Q08350\|CADH7_PICAB	2E-146	Probable cinnamyl alcohol dehydrogenase 7/8
trEMBL	tr\|D7TTE5\|D7TTE5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33767.3}
TAIR10	AT3G19450.1	2E-100	GroES-like zinc-binding alcohol dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7818123	7820701	+
GWHAAZE00000007	mRNA	7818123	7820701	+
GWHAAZE00000007	exon	7818123	7818160	+
GWHAAZE00000007	exon	7818569	7818682	+
GWHAAZE00000007	exon	7818792	7819019	+
GWHAAZE00000007	exon	7819494	7819933	+
GWHAAZE00000007	exon	7820502	7820701	+
GWHAAZE00000007	CDS	7818123	7818160	+
GWHAAZE00000007	CDS	7818569	7818682	+
GWHAAZE00000007	CDS	7818792	7819019	+
GWHAAZE00000007	CDS	7819494	7819933	+
GWHAAZE00000007	CDS	7820502	7820701	+

Transcript Sequence
>GWHTAAZE023448 ATGACACAGACGCCACAGAAAAATAACTTCACTTGGAGGAAAACAGGACCTGAAGATGTAGTATTCAGGGTGTTGTACTGTGGAGTAGACCACACAGATCTTCATTTCATGAGGAGTGATACTCGTATCACCAATTACCCTCTAGTCCCAGGGCATGAAGTAGTGGGAGAAGTAATAGAGTTGGGGTCAGAGGTGAAAAAGTTGAAAGAAGGAGAAATGGTTGGAGTTGGGTGTATTGTAGGGTCTTGTGGGAAGTGTTTGGCTTGCAATTCAAACATAGAGCAGTACTGCAATAACAGAATCTTTACTTACAATGGCATCTACAAAGACGGAAGGCCCACTCAAGGTGGCTTCTCTTCTGCCATGGTGGTTCATCAAAAGTTTGTAGTTAAAATACCAAAAGAACTAGAGCCAGAGCAGGCAGCACCGCTATTGTGCGCAGGGGTAACAGCTTACAGTCCCTTGAAACAGCTCATTGGGTCTAATAGGCCTCTAAAAGGAGGAATATTGGGGCTAGGAGGAGTTAGCCATTTGGGTGTTTTAATAGCAAAAGCAATGGGACACCATGTGACTGTTATAAGCTCCACAAACAAGAAGAGGGATGAGGCTTTAGAACATTTGGGGGCTGATGCCTTCTTGGTGAGCTCTAATGGTGCAGAAATGGAGGCGGCCACCGGCACGCTCGACTATATCCTGGACACTGTGCCAGCGATGCACCCTTTGCAAGCTTACCTTTCACTTCTTAAGGTTGAAGGGAAGATTTTTATAGTTGGAATTTCTCCCAAGCCATTGGAGTTTGATGCTAGTGGTTTGATTCTAGGGAAGAAGACAATTAGTGGGAGTTTCATTGGGAACATGGAAGAGACCCAAGAAATATTAGAGTTTTGGGTGGAGAAAGGTTTGAAGACAATGGTAGAGGTAGTAAAGATGGATTATGTGAACAAGGCATTTGAAAGAATTGAAAGGAATGATGTTAGGTACAAATTTGTGGTTAATGTAGCTGGCAGCAACCTTGAGTGA

Network for GWHGAAZE023418

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	18	132	2.20E-25
PF00107.27	ADH_zinc_N	174	295	4.10E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00083	CAD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.620
	SRR3591706	second leaf	0.091
	SRR3591707	mature leaf	0.330
	SRR3591708	Shoot apex	0.738
	SRR3591709	Stem	3.839
	SRR3591710	White floral bud	0.554
	SRR3591711	White flower	5.200
	SRR3591712	Green floral bud	0.963
	SRR3591713	Yellow flower	4.908
SRP173429	SRR8316895	Juvenile bud stage	0.808
	SRR8316896	Juvenile bud stage	0.633
	SRR8316897	Juvenile bud stage	0.171
	SRR8316894	Third green stage	0.424
	SRR8316900	Third green stage	2.920
	SRR8316901	Third green stage	2.161
	SRR8316898	Complete white stage	15.475
	SRR8316899	Complete white stage	13.746
	SRR8316903	Complete white stage	26.724
	SRR8316902	Silver flowering stage	16.573
	SRR8316904	Silver flowering stage	16.351
	SRR8316905	Silver flowering stage	14.208
	SRR8316906	Gold flowering stage	31.029
	SRR8316907	Gold flowering stage	22.701
	SRR8316908	Gold flowering stage	21.784
SRP132670	SRR6706286	Control	1.978
	SRR6706287	Light intensity 50%	2.475
	SRR6706288	Light intensity 20%	2.265
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.571
	CNS0095593	Slightly white alabastrum(diploid) 2	1.471
	CNS0095594	Slightly white alabastrum(diploid) 3	0.888
	CNS0095595	Whole white alabastrum(diploid) 2	0.919
	CNS0095596	Whole white alabastrum(diploid) 3	0.838
	CNS0095597	Whole white alabastrum(diploid) 4	0.961
	CNS0095598	Silvery flower (diploied) 1	0.523
	CNS0095599	Silvery flower (diploied) 2	3.153
	CNS0095600	Silvery flower (diploied) 3	7.236
	CNS0095601	Golden flower (diploid) 1	0.693
	CNS0095602	Golden flower (diploid) 2	3.275
	CNS0095603	Golden flower (diploid) 3	3.693
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.895
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.248
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.042
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.681
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.737
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.959
	CNS0095610	Silvery flower (tetraploid) 1	1.721
	CNS0095611	Silvery flower (tetraploid) 2	1.507
	CNS0095612	Silvery flower (tetraploid) 3	1.290
	CNS0095613	Golden flower (tetraploid) 1	1.928
	CNS0095614	Golden flower (tetraploid) 2	1.857
	CNS0095615	Golden flower (tetraploid) 3	1.309
CRA001975	CRR073297	Stem 1	0.797
	CRR073298	Stem 2	0.863
	CRR073299	Stem 3	0.173
	CRR073300	Leaf 1	2.072
	CRR073301	Leaf 2	0.891
	CRR073302	Leaf 3	1.626
	CRR073303	Juvenile bud 1	1.573
	CRR073304	Juvenile bud 2	2.208
	CRR073305	Juvenile bud 3	3.180
	CRR073306	Third green 1	7.319
	CRR073307	Third green 2	6.437
	CRR073308	Third green 3	6.246
	CRR073309	Second white 1	4.494
	CRR073310	Second white 2	3.452
	CRR073311	Second white 3	1.307
	CRR073312	Silver flowering 1	0.296
	CRR073313	Silver flowering 2	0.196
	CRR073314	Silver flowering 3	0.597
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.060
	CRR073319	Tawny withering 2	0.722
	CRR073320	Tawny withering 3	2.269