Detail information of GWHGAAZE023424


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI22502.31.54057E-60unnamed protein product [Vitis vinifera]
Swissprottr|O82333|GH31_ARATH5E-53Probable indole-3-acetic acid-amido synthetase GH3.1
trEMBLtr|F6H697|F6H697_VITVI2E-59Putative uncharacterized protein {ECO:0000313|EMBL:CCB47726.1}
TAIR10AT2G14960.14E-46Auxin-responsive GH3 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene81326358134086+
GWHAAZE00000007mRNA81326358134086+
GWHAAZE00000007exon81326358132783+
GWHAAZE00000007exon81328608132934+
GWHAAZE00000007exon81330598133160+
GWHAAZE00000007exon81337258133795+
GWHAAZE00000007exon81338878134086+
GWHAAZE00000007CDS81326358132783+
GWHAAZE00000007CDS81328608132934+
GWHAAZE00000007CDS81330598133160+
GWHAAZE00000007CDS81337258133795+
GWHAAZE00000007CDS81338878134086+
Transcript Sequence

Network for GWHGAAZE023424

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03321.14GH320511.20E-05
PF03321.14GH3611385.30E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14487GH3 Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.139
SRR3591709Stem0.033
SRR3591710White floral bud0.017
SRR3591711White flower0.940
SRR3591712Green floral bud0.020
SRR3591713Yellow flower0.157
SRP173429 SRR8316895Juvenile bud stage 0.098
SRR8316896Juvenile bud stage 0.006
SRR8316897Juvenile bud stage 0.050
SRR8316894Third green stage 0.077
SRR8316900Third green stage 0.085
SRR8316901Third green stage 0.035
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.043
SRR8316903Complete white stage 0.067
SRR8316902Silver flowering stage0.085
SRR8316904Silver flowering stage0.053
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.124
SRR6706287Light intensity 50%0.267
SRR6706288Light intensity 20%0.023
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.016
CNS0095595Whole white alabastrum(diploid) 20.098
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.204
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.260
CNS0095611Silvery flower (tetraploid) 20.063
CNS0095612Silvery flower (tetraploid) 30.038
CNS0095613Golden flower (tetraploid) 10.046
CNS0095614Golden flower (tetraploid) 20.477
CNS0095615Golden flower (tetraploid) 30.218
CRA001975CRR073297Stem 10.054
CRR073298Stem 20.295
CRR073299Stem 30.165
CRR073300Leaf 10.115
CRR073301Leaf 20.050
CRR073302Leaf 30.097
CRR073303Juvenile bud 10.230
CRR073304Juvenile bud 20.045
CRR073305Juvenile bud 30.330
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.019
CRR073311Second white 30.082
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000