Gene detail

Detail information of GWHGAAZE023425

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009608534.1	1.0746E-127	PREDICTED: probable WRKY transcription factor 7 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9STX0\|WRKY7_ARATH	8E-87	Probable WRKY transcription factor 7
trEMBL	tr\|M1CC13\|M1CC13_SOLTU	2E-127	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400064256}
TAIR10	AT4G24240.1	1E-54	WRKY DNA-binding protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8149672	8151238	-
GWHAAZE00000007	mRNA	8149672	8151238	-
GWHAAZE00000007	exon	8149672	8149807	-
GWHAAZE00000007	exon	8150196	8150321	-
GWHAAZE00000007	exon	8150526	8150868	-
GWHAAZE00000007	exon	8150971	8151238	-
GWHAAZE00000007	CDS	8150971	8151238	-
GWHAAZE00000007	CDS	8150526	8150868	-
GWHAAZE00000007	CDS	8150196	8150321	-
GWHAAZE00000007	CDS	8149672	8149807	-

Transcript Sequence
>GWHTAAZE023455 ATGGCTGTGGAACTCATGATGAGTAATTACAGGAACGATAACTTCGTCAACAAAGTCGAAGACAACGCAGTGCAAGAAGCCGCTTCCGGTCTTCAAAGCGTCGAAAAACTCATAAAAATGCTATCAAATTCGGAGCAGAACCAGGGATCTTCGTCTTCAATGGAGGATTTAGAAATGGACTGTAGATCTGTCGCTACTGTTGCTGTAACGAAGTTTAAGAAAGTTATCTCTCTTCTAAATCGAACCAGAACCGGCCATGCTCGCTTTCTTTATTGTCCAACTCCTATTCAACAAGTTCCTCTTATTGTTCAGTATCAGCCTGAGAATCATTTGTTGAAGGAATCGGGATCAAAAACTATCAGTTTCGCGTACTCGCCGGCGATTTCACGTGCGAACTCGTTTGTATCGACGTTAACAGGCGAATCGGATAGCAAGAGGCCTGGTTCGTCGGCATTTCAGATTTGTAATCTCTCTCGGAATGTTTCTTCCGATAAACCGCCGTTGTCTTCTTCGACGACGTCGTTGAAGAGGAAGTGTAGCTCCTCTGGAACCGCCGCCTCTGGTAAATGCAGCGGTGGCTCCTCCGGTCGCTGCCACTGTTCCAAGCGGAGAAAGCTGCGAATGAAGAGAGTAATTAGGGTTCCGGCAATAAGCATGAAGCTAGCTGACATACCACCGGATGATTACTCATGGAGGAAGTACGGACAGAAACCAATTAAAGGATCTCCACATCCAAGGGGATATTACAAGTGCAGTAGTGTGAGAGGCTGCCCAGCTCGTAAACATGTGGAGAGAGCATTAGATGATGCAACCATGCTGATTGTGACCTATGAAGGCGAGCATAACCATAATCTCTCTCTTGCTGAAACTTCT

Network for GWHGAAZE023425

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10533.10	Plant_zn_clust	176	223	9.40E-19
PF03106.16	WRKY	227	284	1.00E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.616
	SRR3591706	second leaf	12.790
	SRR3591707	mature leaf	13.735
	SRR3591708	Shoot apex	31.406
	SRR3591709	Stem	41.496
	SRR3591710	White floral bud	21.671
	SRR3591711	White flower	27.046
	SRR3591712	Green floral bud	16.789
	SRR3591713	Yellow flower	40.060
SRP173429	SRR8316895	Juvenile bud stage	8.489
	SRR8316896	Juvenile bud stage	11.960
	SRR8316897	Juvenile bud stage	3.826
	SRR8316894	Third green stage	5.297
	SRR8316900	Third green stage	10.148
	SRR8316901	Third green stage	16.372
	SRR8316898	Complete white stage	7.698
	SRR8316899	Complete white stage	43.033
	SRR8316903	Complete white stage	11.333
	SRR8316902	Silver flowering stage	9.256
	SRR8316904	Silver flowering stage	15.214
	SRR8316905	Silver flowering stage	6.810
	SRR8316906	Gold flowering stage	15.753
	SRR8316907	Gold flowering stage	15.238
	SRR8316908	Gold flowering stage	10.257
SRP132670	SRR6706286	Control	19.796
	SRR6706287	Light intensity 50%	18.998
	SRR6706288	Light intensity 20%	18.288
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.904
	CNS0095593	Slightly white alabastrum(diploid) 2	18.209
	CNS0095594	Slightly white alabastrum(diploid) 3	17.804
	CNS0095595	Whole white alabastrum(diploid) 2	14.980
	CNS0095596	Whole white alabastrum(diploid) 3	12.798
	CNS0095597	Whole white alabastrum(diploid) 4	15.991
	CNS0095598	Silvery flower (diploied) 1	18.293
	CNS0095599	Silvery flower (diploied) 2	11.876
	CNS0095600	Silvery flower (diploied) 3	17.836
	CNS0095601	Golden flower (diploid) 1	14.671
	CNS0095602	Golden flower (diploid) 2	23.522
	CNS0095603	Golden flower (diploid) 3	24.454
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.236
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.797
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.458
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.548
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.074
	CNS0095610	Silvery flower (tetraploid) 1	14.425
	CNS0095611	Silvery flower (tetraploid) 2	7.630
	CNS0095612	Silvery flower (tetraploid) 3	9.166
	CNS0095613	Golden flower (tetraploid) 1	8.163
	CNS0095614	Golden flower (tetraploid) 2	8.907
	CNS0095615	Golden flower (tetraploid) 3	12.701
CRA001975	CRR073297	Stem 1	28.292
	CRR073298	Stem 2	27.002
	CRR073299	Stem 3	30.297
	CRR073300	Leaf 1	46.694
	CRR073301	Leaf 2	37.554
	CRR073302	Leaf 3	44.388
	CRR073303	Juvenile bud 1	39.953
	CRR073304	Juvenile bud 2	44.062
	CRR073305	Juvenile bud 3	46.930
	CRR073306	Third green 1	8.301
	CRR073307	Third green 2	13.119
	CRR073308	Third green 3	14.455
	CRR073309	Second white 1	6.108
	CRR073310	Second white 2	6.365
	CRR073311	Second white 3	4.554
	CRR073312	Silver flowering 1	5.264
	CRR073313	Silver flowering 2	5.767
	CRR073314	Silver flowering 3	3.541
	CRR073315	Gold flowering 1	52.005
	CRR073316	Gold flowering 2	44.525
	CRR073317	Gold flowering 3	49.232
	CRR073318	Tawny withering 1	95.606
	CRR073319	Tawny withering 2	73.786
	CRR073320	Tawny withering 3	56.507