Gene detail

Detail information of GWHGAAZE023432

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278713.1	3.5874E-175	PREDICTED: probable receptor-like protein kinase At5g24010 [Vitis vinifera]
Swissprot	tr\|O22187\|Y2232_ARATH	2E-123	Probable receptor-like protein kinase At2g23200 (Precursor)
trEMBL	tr\|D7TTD9\|D7TTD9_VITVI	1E-175	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33761.3}
TAIR10	AT2G23200.1	4E-102	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8359957	8362389	-
GWHAAZE00000007	mRNA	8359957	8362389	-
GWHAAZE00000007	exon	8359957	8360420	-
GWHAAZE00000007	exon	8360688	8362389	-
GWHAAZE00000007	CDS	8360688	8362389	-
GWHAAZE00000007	CDS	8359957	8360420	-

Transcript Sequence
>GWHTAAZE023462 ATGGAAAACCTTCACCCCCACACTCTAATTTTTTCTCTCTACCTCCTCTTCCACTTCTCTTCACCGTACACTTTACCCGACCACTACTTCATCAACTGTGGCTCCTCCTCCAACGCCACCATCGGCGGCCGGAACTTCACCGGCGACGACAACTCGCCCCTCCTCTCCACCGCCGGCGAAACTACTACCAACCTATCAACGGTCAATCCAACTCTCTATCAAACTGCTAGAATTTTCAAAAAACAATCTTTTTACAACCTTAAAATCCGCGAAAATGGTATTTACATGGTAAGATTCCATTTTTACCCCTTTCTCTCTCTACCCAATGCTCAATTCAACGTTTCTGTTCGTGGGTTTACTTTGTTAGTGGATTTCCATGTTCCAAACACTACAAATTCGCCTCTAATCAAAGAGTTTTTACTCACAATTGACCAACCAAAATTTAAAATCCACTTCACACCATCAAAGCCCTTTTCTTTTGCTTTTGTGAATGCAATTGAAGCATTTATTGTCCCTCAAAATTTCATCCCCAATTCTTATGTTTTACACACAATTCATAGGATTAACATTGGAGGTCCTAAATTGACCCAAGATAATGATAACCTTTTGAGGAATTGGGTTGGTGATGATGATTATCTCCTTTCTAAGGGTGCTGCAATAAATACTACAAATCCTGGAGTTGTACTTAATTACCTAGGAGAAATAGATGAATTCACAGCCCCTAGAATTGTCTACCAAACAGCCAAACAATTGAATATAGACAATGGTCATAAGGAAAATAATCTCTTGAACATGACTTGGCGATTCAGTGTGACGAAAAACGCTTCTCATTTTGTTCGGGCGCATTTTTGTGATATTGTTAATGTAAAGCAGAGTTTTGGCAAGTTCAATTTCTTTGTTGATGAAATCTTAGGTGGGGAGATTAGGCCGGTATCTGTTTATCCCCAATTTGCGACTCCTTTTCACAATGATGTCACCGTTGAATCTGATGATTCGGGGTTTATGAGTATTAGTATTGGCCGTCGTAGTGATAGCGATTCACAGGATATAAGACCGTTTTTAAACGGGCTTGAGATTATGGAGATAATGAAGGATTTGCCCATGTTTGATCCAAGAGAATCGATGAAGAAAAAGAATAGAGTGTTTGTAATAATTGGCTCTGCTTTTGGGGGCGTGGTGTTCTTGATTTTGCTGCTGGTGGTGTTGTTTTGGTTGAAATGCAGAAGAGCTAAGCCTGTCGATAGTTTTGATCGGCCATTAGTTCTTGCATATGGAAGAAGTTCATATGGTACTGTTAGTTCAGGAAATGTTAATGCCTCTCCTGGTACTGTAAATCTTGGGTTGAAGCTAAATTTTGATGAAATTTTATATGCAACAAATGGTTTCGATCCAAAGTTGATGATTGGCGAGGGCGGGTTTGGGAAAGTGTACAAAGGGACTCTTCGAATTGGAACAAAAGTGGCTGTTAAACGGAGTGAACCAGGGCATGGACAAGGCCTATCCGAGTTCAAAACAGAAATAATGGTTTTGTCAAAGATTCGCTATATCCATCTAGTTTCTTTAATCGGGTACTGTGACGAAAGATCAGAGATGATATTGGTTTATGAGTTTATGGAGAAAGGGACATTAAGAGAGCATTTGTATAGCTCTAATAATCAAGAATCCAAATTGTCTTGGAACAAAAGGCTTGAAATTTGTATAGTGCTATGCGCTAGGCCAGCTATTAACAACTTGCTCCCTCATGATGAAGTGAATTTGGCCGATTGGGGGATTTCTCGGCAAAAGATGGGGGAACTCGAGAAGATCGTTGATCCTTTTCTTGAGGGTAAGATTAATCCGAATTCTTTGAGGAAATTCGGGGAGACGGTGGAGAAGTGTTTGAGGGAATCCGGTGTCGAGAGGCCTAGTATGGTTGATGTAATGTGGGATTTGGAGTATGCATTTCAACTTCAACAAACACATGTGGTAAGAGAGCCACATGAGGATAGTACTACCACTACAAATGAATATTCTTGGGGTCAATTCGCAATGCCTCTTGGAATTAATCCTTTGGATTCTCAAAGCATCGCAATTGAAGAAGATTATTTAACAAGTGAGGTTTCAAGTACAAGTTTTGGAAATGCAAGTGGAGTGTTTTCACAATTGAAGGTTGATGATGCAAGGTGA

Network for GWHGAAZE023432

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	31	361	3.90E-29
PF07714.18	PK_Tyr_Ser-Thr	467	569	7.10E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.846
	SRR3591706	second leaf	1.848
	SRR3591707	mature leaf	3.010
	SRR3591708	Shoot apex	1.419
	SRR3591709	Stem	4.457
	SRR3591710	White floral bud	0.341
	SRR3591711	White flower	0.781
	SRR3591712	Green floral bud	0.168
	SRR3591713	Yellow flower	0.131
SRP173429	SRR8316895	Juvenile bud stage	0.792
	SRR8316896	Juvenile bud stage	0.638
	SRR8316897	Juvenile bud stage	0.106
	SRR8316894	Third green stage	0.382
	SRR8316900	Third green stage	0.739
	SRR8316901	Third green stage	0.369
	SRR8316898	Complete white stage	0.100
	SRR8316899	Complete white stage	1.518
	SRR8316903	Complete white stage	0.447
	SRR8316902	Silver flowering stage	0.081
	SRR8316904	Silver flowering stage	0.111
	SRR8316905	Silver flowering stage	0.069
	SRR8316906	Gold flowering stage	0.179
	SRR8316907	Gold flowering stage	0.132
	SRR8316908	Gold flowering stage	0.057
SRP132670	SRR6706286	Control	0.942
	SRR6706287	Light intensity 50%	0.811
	SRR6706288	Light intensity 20%	0.657
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.525
	CNS0095593	Slightly white alabastrum(diploid) 2	0.418
	CNS0095594	Slightly white alabastrum(diploid) 3	0.464
	CNS0095595	Whole white alabastrum(diploid) 2	0.219
	CNS0095596	Whole white alabastrum(diploid) 3	0.240
	CNS0095597	Whole white alabastrum(diploid) 4	0.218
	CNS0095598	Silvery flower (diploied) 1	0.988
	CNS0095599	Silvery flower (diploied) 2	0.950
	CNS0095600	Silvery flower (diploied) 3	0.313
	CNS0095601	Golden flower (diploid) 1	1.603
	CNS0095602	Golden flower (diploid) 2	0.829
	CNS0095603	Golden flower (diploid) 3	1.270
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.392
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.455
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.658
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.767
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.183
	CNS0095610	Silvery flower (tetraploid) 1	0.077
	CNS0095611	Silvery flower (tetraploid) 2	0.390
	CNS0095612	Silvery flower (tetraploid) 3	0.474
	CNS0095613	Golden flower (tetraploid) 1	0.037
	CNS0095614	Golden flower (tetraploid) 2	0.102
	CNS0095615	Golden flower (tetraploid) 3	0.038
CRA001975	CRR073297	Stem 1	1.024
	CRR073298	Stem 2	1.112
	CRR073299	Stem 3	0.921
	CRR073300	Leaf 1	0.923
	CRR073301	Leaf 2	0.839
	CRR073302	Leaf 3	0.684
	CRR073303	Juvenile bud 1	0.823
	CRR073304	Juvenile bud 2	1.244
	CRR073305	Juvenile bud 3	0.934
	CRR073306	Third green 1	0.449
	CRR073307	Third green 2	0.293
	CRR073308	Third green 3	0.475
	CRR073309	Second white 1	0.166
	CRR073310	Second white 2	0.221
	CRR073311	Second white 3	0.151
	CRR073312	Silver flowering 1	0.069
	CRR073313	Silver flowering 2	0.035
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.237
	CRR073316	Gold flowering 2	1.620
	CRR073317	Gold flowering 3	0.722
	CRR073318	Tawny withering 1	3.556
	CRR073319	Tawny withering 2	2.103
	CRR073320	Tawny withering 3	1.447