Gene detail

Detail information of GWHGAAZE023439

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02559.1	0	unnamed protein product [Coffea canephora]
COG	YP_001957951.1	2E-11	hypothetical protein Aasi_0851
Swissprot	tr\|O22193\|PUB4_ARATH	0	U-box domain-containing protein 4
trEMBL	tr\|A0A068U319\|A0A068U319_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02559.1}
TAIR10	AT2G23140.1	0	RING/U-box superfamily protein with ARM repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8646728	8651875	+
GWHAAZE00000007	mRNA	8646728	8651875	+
GWHAAZE00000007	exon	8646728	8647015	+
GWHAAZE00000007	exon	8647954	8648070	+
GWHAAZE00000007	exon	8649125	8651110	+
GWHAAZE00000007	exon	8651816	8651875	+
GWHAAZE00000007	CDS	8646728	8647015	+
GWHAAZE00000007	CDS	8647954	8648070	+
GWHAAZE00000007	CDS	8649125	8651110	+
GWHAAZE00000007	CDS	8651816	8651875	+

Transcript Sequence
>GWHTAAZE023469 ATGGAGATTTCAGTGTTAAAAGCTCTTCTCAAGAACATATCTTGCTTCTTTCGATTATCATCTAGTGAGAACGTAAACTTCGAGCCCTTTCAGAAATATTACGAGAAGATCGAAGAGATACTGAAGTTGATAAAGCCAGTACTTGATGCAATTGTTGTTTCTGAAATAGCTTCTGAAATAACTTCTGATGAACTGCTTCAAAAGGCATTTTCAGGCTTGAGTCAGTCTGTTGATGAACTGAGGGAGTTGTTTGAAAACTGGCATCCGTTGATGAGTAAAGTTTACTTCGTTTTGCAAGTCGAATCATACATAGCAAAGGCTAGGACTTGCGGGCTGGATATTTTCGAGCTGCTAAAATCTTCTGATCAATGTCTCACTGTTGGATTAAGTTCAGCATCTCTTGAGGTCTGCGCACAGAAAATTAAGCATATGGGATATGAACAAATGTCGGTCATCATCACAAAAGCTATAAGGGATCAAATGGAGGGCTCTGAACCTAGCTTTGATAGTCTGACAAAAATTACAGATTGCTTGAACTTAAAGTCAAACCAGGCCCTGCTTATTGAGGTTGTGGCCCTCGAAAAATTGAAGGAGAATGTTGAACAAACAGAAAAGAATGGGGACTTGGAATATATTGATGACATGATTGCTCTTATCACATACATGCACGATCGCTATGTTACAATGAAACAGTCCCAGAGCTCTAATCCCGTTCTGATACCTGCTGATTTTTGCTGCCCTCTTTCACTAGAACTGATGACGGACCCCGTTATTGTGGCTTCTGGACAAACATACGAGCGTGCATATATCCGTAAATGGATCGATCTTGGTCTCACTGTTTGCCCCAAAACACACCAAATTTTATCTCACACTAATCTTATTCCTAATTACACTGTAAAGGCACTCATTGCAAATTGGTGCGACTCAAACAATGTGAAGCTGCCCGATCCCGTTAAATCTATGAATGTGAACCACCACCCTCCTCATCTTACCCATCCTGAGTCCAGTCCCTTGCGGGAACCACTTATTGTTCCTCATTCACCCGATTCAGCTCGATCAATGGGTTCCCCAGCATCTAACATAATCTTGGCTAGTGGGACTCATCGAGAGGGAACTTCCCCAATGCATCCTCGTTCTTCTTCAGAAGAGTCTTTGCCTGATGACAGATTGGTTTACTCAGGAGAGAGTTGTTTGGATGCAAGTGGTCAACTATCCATGGCGTCACCGTCAAGAAAAGAATTTTCTACTGGTGTTGGGGGTGACGAACAGTCATCTGAAGGCCACAATAGAACCAATTCAGCATCTAGCACAGTTTCCAATGCAAATTTTTCCCAAGAAATTCCTGGTGATGCCAATGAGGGGGGTTCCAGAGAGGCGGCAGCCTACGGTAATGATGCTTCGGTGGAGATGGCATCTGAATCACAGCCTACTGCTACATTGACGGCCCCACAGAGAGAGCCAGAGTTCCCAAACCGATTTGAGACCCGATCTCGAAGCCAAACAATCTGGCGAAGGCCATCCGAGAGGTTTATTCCAAGGATAGTTTCATCTCCCACCATTGAAACTCAGCCCGATCTTTCTGGAGTCGAAACCCAAGTGCGGCAACTCGTTGAGGATTTGAAGAGCATGTCACTTGATGCACAAAGAGATGCTACAGCAGAGCTCCGGTTACTTGCCAAGCATAATATGGGAAACCGAGTCGTAATCGCAAACTGTGGGGCCATTATTCTGCTTGTTGAGCTGCTTCGTTCACCCGATACAAAAATACAGGAAAATGCCGTTACTGCCCTTCTAAATTTATCGATCAATGATAACAACAAGACAGCAATTGCAAATGCTGAAGCAATTGGACCTCTGATTCAAGTCCTTGAGTCGGGTACCCCCGAGGCCAAGGAAAACTCAGCTGCAACTCTTTTTAGCCTGTCGGTGATAGAGGAAAACAAAGTAAAGATTGGGAGGTCAGGGGCAATCAAACCGTTGGTTGATTTATTGGGATACGGAACACCTAGGGGAAAGAAAGATGCGGCCACGGCTTTGTTTAACTTGTCAATATTTCATGAAAATAAGGCAAAGATTGTGCAGGCAGGTGCAGTGAAGCACCTTGTGGAGTTGATGGACCCTGCTGCAGGTATGGTTGATAAGGCAGTTGCCGTGTTGTCAAATCTTGCTACTATACCTGAGGGGAGAACCGCTATTGGTCAGGAGGGTGGGATCCCTGTTCTAGTCGAGGTTGTTGAGTTGGGTTCTGCTAGAGGGAAGGAGAATGCAGCAGCTGCTCTTCTGCAGCTCTGCACCAACAGTAGTAGATTCTGCAACATGGTTCTCCAAGAAGGAGCCGTCCCCCCATTAGTGGCTTTGTCCCAGTCTGGCACCCCAAGAGCCAAAGAAAAGGCTCAGGCACTACTTAGCTACTTTAGAAACCAGCGGCATGGTAATGCGGGGAGGGGCTGA

Network for GWHGAAZE023439

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0268

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.16	U-box	240	310	1.90E-20
PF00514.24	Arm	564	601	3.20E-09
PF00514.24	Arm	646	683	1.30E-05
PF00514.24	Arm	687	723	8.40E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0004842	molecular_function	ubiquitin-protein transferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.138
	SRR3591706	second leaf	20.797
	SRR3591707	mature leaf	30.343
	SRR3591708	Shoot apex	23.957
	SRR3591709	Stem	51.105
	SRR3591710	White floral bud	47.266
	SRR3591711	White flower	54.473
	SRR3591712	Green floral bud	33.446
	SRR3591713	Yellow flower	55.965
SRP173429	SRR8316895	Juvenile bud stage	20.154
	SRR8316896	Juvenile bud stage	27.827
	SRR8316897	Juvenile bud stage	14.369
	SRR8316894	Third green stage	11.078
	SRR8316900	Third green stage	27.769
	SRR8316901	Third green stage	29.080
	SRR8316898	Complete white stage	15.351
	SRR8316899	Complete white stage	49.666
	SRR8316903	Complete white stage	28.748
	SRR8316902	Silver flowering stage	19.366
	SRR8316904	Silver flowering stage	27.714
	SRR8316905	Silver flowering stage	13.255
	SRR8316906	Gold flowering stage	49.307
	SRR8316907	Gold flowering stage	44.363
	SRR8316908	Gold flowering stage	54.612
SRP132670	SRR6706286	Control	36.348
	SRR6706287	Light intensity 50%	34.828
	SRR6706288	Light intensity 20%	35.130
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.469
	CNS0095593	Slightly white alabastrum(diploid) 2	18.783
	CNS0095594	Slightly white alabastrum(diploid) 3	16.269
	CNS0095595	Whole white alabastrum(diploid) 2	14.932
	CNS0095596	Whole white alabastrum(diploid) 3	11.554
	CNS0095597	Whole white alabastrum(diploid) 4	14.207
	CNS0095598	Silvery flower (diploied) 1	24.004
	CNS0095599	Silvery flower (diploied) 2	19.305
	CNS0095600	Silvery flower (diploied) 3	51.381
	CNS0095601	Golden flower (diploid) 1	23.880
	CNS0095602	Golden flower (diploid) 2	53.920
	CNS0095603	Golden flower (diploid) 3	53.112
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.667
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.482
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.092
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.226
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.348
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.257
	CNS0095610	Silvery flower (tetraploid) 1	59.618
	CNS0095611	Silvery flower (tetraploid) 2	58.451
	CNS0095612	Silvery flower (tetraploid) 3	65.119
	CNS0095613	Golden flower (tetraploid) 1	36.104
	CNS0095614	Golden flower (tetraploid) 2	53.079
	CNS0095615	Golden flower (tetraploid) 3	65.436
CRA001975	CRR073297	Stem 1	40.305
	CRR073298	Stem 2	34.598
	CRR073299	Stem 3	34.873
	CRR073300	Leaf 1	42.995
	CRR073301	Leaf 2	41.093
	CRR073302	Leaf 3	37.135
	CRR073303	Juvenile bud 1	43.601
	CRR073304	Juvenile bud 2	33.292
	CRR073305	Juvenile bud 3	61.394
	CRR073306	Third green 1	64.189
	CRR073307	Third green 2	53.512
	CRR073308	Third green 3	59.290
	CRR073309	Second white 1	57.541
	CRR073310	Second white 2	58.065
	CRR073311	Second white 3	53.029
	CRR073312	Silver flowering 1	52.004
	CRR073313	Silver flowering 2	53.711
	CRR073314	Silver flowering 3	43.677
	CRR073315	Gold flowering 1	21.052
	CRR073316	Gold flowering 2	30.334
	CRR073317	Gold flowering 3	26.839
	CRR073318	Tawny withering 1	38.314
	CRR073319	Tawny withering 2	35.435
	CRR073320	Tawny withering 3	42.003