Gene detail

Detail information of GWHGAAZE023444

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010028119.1	2.3497E-154	PREDICTED: probable prolyl 4-hydroxylase 9 [Eucalyptus grandis]
COG	YP_004753320.1	3E-32	peptidyl prolyl 4-hydroxylase-like protein subunit alpha
Swissprot	tr\|Q8VZJ7\|P4H9_ARATH	2E-142	Probable prolyl 4-hydroxylase 9 (Precursor)
trEMBL	tr\|A0A059AL93\|A0A059AL93_EUCGR	9E-155	Uncharacterized protein {ECO:0000313\|EMBL:KCW54777.1}
TAIR10	AT4G33910.1	3E-108	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8778636	8782062	+
GWHAAZE00000007	mRNA	8778636	8782062	+
GWHAAZE00000007	exon	8778636	8778758	+
GWHAAZE00000007	exon	8778860	8778970	+
GWHAAZE00000007	exon	8779695	8779852	+
GWHAAZE00000007	exon	8779930	8780032	+
GWHAAZE00000007	exon	8780400	8780495	+
GWHAAZE00000007	exon	8780801	8780866	+
GWHAAZE00000007	exon	8780965	8781084	+
GWHAAZE00000007	exon	8781976	8782062	+
GWHAAZE00000007	CDS	8778636	8778758	+
GWHAAZE00000007	CDS	8778860	8778970	+
GWHAAZE00000007	CDS	8779695	8779852	+
GWHAAZE00000007	CDS	8779930	8780032	+
GWHAAZE00000007	CDS	8780400	8780495	+
GWHAAZE00000007	CDS	8780801	8780866	+
GWHAAZE00000007	CDS	8780965	8781084	+
GWHAAZE00000007	CDS	8781976	8782062	+

Transcript Sequence
>GWHTAAZE023474 ATGAAAGGCAAAGGTAGGGGTGCAGGAGGAGCGTGGTTGAGCTTAGGGTTACCTGCTGTATTCTTTCTATGCTTATGCTTCTTCTTCGCTGGATTTTTCGGTTCTATGCTCTTCTCTCAGCAGGATGAATCTAATGGAAGAGCTAGAGCGAGGATGCTTGATGAGGAGGGAGATTTTGATCCGTTGCCTCGGGGTAAGACCGGAGAAGATTCCGTAACAGGCATTCCCTTCCAGGTTTTAAGCTGGAAACCACGGGCATTATACTATCCTGGTTTTGCAACAGCAGAACAATGTGAAACCATAATTAAGTTGGCAAAAGTACATCTAGCACCATCAAGCCTGGCTTTACGTAAAGGAGAAACGTCAGAGAACACCAAGGGAATCAGAACAAGTTCTGGAATGTTTATGACTGCATCTGAAGACAAAACTGGGACACTGGATCTTGTTGAGGAGAAAATTGCCAGGGCCACAATGATCCCTAGATCTCATGGAGAGGCATTCAATGTCTTGCGCTATGAGATCGGGCAAAGGTATAATTCACATTATGATGCATTCAACCCAGCTGAATATGGACCACAGAAAAGCCAGAGGATTGCATCCTTCTTGTTGTATCTATCTGATGTTGAAGAAGGAGGTGAAACCATGTTCCCGTTTGAGAATGGAATGAACATGGATGGAACCTATGACTACCGGGAGTGTATAGGTTTAAAAGTAAAGCCGCAGAGAGGGGATGGACTTCTATTCTATTCACTCTTCCCAAATGGTACAATTGATGCGAGATCACTTCATGGAAGCTGTCCAGTAATTGAAGGGCAGAAATGGGTGGCCACAAAGTGGATCAGGGATCAAGAACAGGATGATTGA

Network for GWHGAAZE023444

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13640.7	2OG-FeII_Oxy_3	168	281	8.70E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00472	P4HA	Metabolic pathways	map01100
K00472	P4HA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418	molecular_function	L-ascorbic acid binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.138
	SRR3591706	second leaf	14.792
	SRR3591707	mature leaf	9.198
	SRR3591708	Shoot apex	22.963
	SRR3591709	Stem	58.589
	SRR3591710	White floral bud	12.010
	SRR3591711	White flower	12.850
	SRR3591712	Green floral bud	10.614
	SRR3591713	Yellow flower	21.029
SRP173429	SRR8316895	Juvenile bud stage	13.147
	SRR8316896	Juvenile bud stage	20.043
	SRR8316897	Juvenile bud stage	8.868
	SRR8316894	Third green stage	7.955
	SRR8316900	Third green stage	25.135
	SRR8316901	Third green stage	23.943
	SRR8316898	Complete white stage	11.587
	SRR8316899	Complete white stage	25.158
	SRR8316903	Complete white stage	19.370
	SRR8316902	Silver flowering stage	14.714
	SRR8316904	Silver flowering stage	19.071
	SRR8316905	Silver flowering stage	9.908
	SRR8316906	Gold flowering stage	38.050
	SRR8316907	Gold flowering stage	37.995
	SRR8316908	Gold flowering stage	39.070
SRP132670	SRR6706286	Control	16.687
	SRR6706287	Light intensity 50%	20.383
	SRR6706288	Light intensity 20%	18.617
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.939
	CNS0095593	Slightly white alabastrum(diploid) 2	19.305
	CNS0095594	Slightly white alabastrum(diploid) 3	17.463
	CNS0095595	Whole white alabastrum(diploid) 2	12.753
	CNS0095596	Whole white alabastrum(diploid) 3	14.329
	CNS0095597	Whole white alabastrum(diploid) 4	10.854
	CNS0095598	Silvery flower (diploied) 1	11.755
	CNS0095599	Silvery flower (diploied) 2	11.213
	CNS0095600	Silvery flower (diploied) 3	23.234
	CNS0095601	Golden flower (diploid) 1	12.671
	CNS0095602	Golden flower (diploid) 2	19.021
	CNS0095603	Golden flower (diploid) 3	18.784
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.964
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.248
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.508
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.546
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.143
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.853
	CNS0095610	Silvery flower (tetraploid) 1	20.024
	CNS0095611	Silvery flower (tetraploid) 2	17.003
	CNS0095612	Silvery flower (tetraploid) 3	15.713
	CNS0095613	Golden flower (tetraploid) 1	17.526
	CNS0095614	Golden flower (tetraploid) 2	23.676
	CNS0095615	Golden flower (tetraploid) 3	9.280
CRA001975	CRR073297	Stem 1	19.901
	CRR073298	Stem 2	17.059
	CRR073299	Stem 3	17.324
	CRR073300	Leaf 1	19.644
	CRR073301	Leaf 2	17.092
	CRR073302	Leaf 3	18.159
	CRR073303	Juvenile bud 1	19.985
	CRR073304	Juvenile bud 2	20.056
	CRR073305	Juvenile bud 3	15.529
	CRR073306	Third green 1	11.231
	CRR073307	Third green 2	12.514
	CRR073308	Third green 3	9.038
	CRR073309	Second white 1	13.266
	CRR073310	Second white 2	11.928
	CRR073311	Second white 3	11.437
	CRR073312	Silver flowering 1	11.344
	CRR073313	Silver flowering 2	9.095
	CRR073314	Silver flowering 3	11.255
	CRR073315	Gold flowering 1	9.012
	CRR073316	Gold flowering 2	9.898
	CRR073317	Gold flowering 3	6.757
	CRR073318	Tawny withering 1	15.653
	CRR073319	Tawny withering 2	20.251
	CRR073320	Tawny withering 3	15.788