Gene detail

Detail information of GWHGAAZE023453

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008226054.1	5.5575E-178	PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1 isoform X2 [Prunus mume]
COG	YP_004862459.1	2E-94	3-deoxy-7-phosphoheptulonate synthase
Swissprot	tr\|Q9AV97\|KDSA1_ARATH	1E-176	2-dehydro-3-deoxyphosphooctonate aldolase 1
trEMBL	tr\|M5WGN5\|M5WGN5_PRUPE	5E-178	Uncharacterized protein {ECO:0000313\|EMBL:EMJ12957.1}
TAIR10	AT1G79500.4	5E-139	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8925496	8932790	+
GWHAAZE00000007	mRNA	8925496	8932790	+
GWHAAZE00000007	exon	8925496	8925531	+
GWHAAZE00000007	exon	8925669	8925766	+
GWHAAZE00000007	exon	8926156	8926252	+
GWHAAZE00000007	exon	8926647	8926712	+
GWHAAZE00000007	exon	8929594	8929653	+
GWHAAZE00000007	exon	8929769	8929843	+
GWHAAZE00000007	exon	8929953	8930037	+
GWHAAZE00000007	exon	8930160	8930218	+
GWHAAZE00000007	exon	8930360	8930404	+
GWHAAZE00000007	exon	8930556	8930675	+
GWHAAZE00000007	exon	8931892	8931939	+
GWHAAZE00000007	exon	8932027	8932074	+
GWHAAZE00000007	exon	8932764	8932790	+
GWHAAZE00000007	CDS	8925496	8925531	+
GWHAAZE00000007	CDS	8925669	8925766	+
GWHAAZE00000007	CDS	8926156	8926252	+
GWHAAZE00000007	CDS	8926647	8926712	+
GWHAAZE00000007	CDS	8929594	8929653	+
GWHAAZE00000007	CDS	8929769	8929843	+
GWHAAZE00000007	CDS	8929953	8930037	+
GWHAAZE00000007	CDS	8930160	8930218	+
GWHAAZE00000007	CDS	8930360	8930404	+
GWHAAZE00000007	CDS	8930556	8930675	+
GWHAAZE00000007	CDS	8931892	8931939	+
GWHAAZE00000007	CDS	8932027	8932074	+
GWHAAZE00000007	CDS	8932764	8932790	+

Transcript Sequence
>GWHTAAZE023483 ATGGATTCCTCGGGAAAGCTATTTAACCAGCTCAAGACAGCAAAACCTTTTTTCCTATTAGCAGGTCCCAATGTTATTGAATCAGAGGAGCATGTTCTACGTATGGCCGGGCACATCAAGGACATTTCATCAAAACTTGGGTTGCAGTTGGTTTTCAAATCGAGCTTTGACAAAGCTAATAGAACATCCTCTAAATCATTTCGGGGTCCTGGCTTAGCTGAAGGCTTGAAGATCCTTGAAAAGGTGAAAGTGGCATATGACATACCCATAGTGACTGATGTACATGAAGCTAATCAGTGCGATGCAGTTGGCAAGGTCGCCGATATAATTCAGATTCCAGCTTTTTTATGCCGACAGACAGATCTCCTAGTTGCAGCTGCCAAGACAGGAAAAATTATCAATATTAAGAAAGGGCAATTTTGTGCTCCTTCTGTCATGGTAAATTCTGCCGAGAAGGTTAGATTGGCCGGAAATCAAAATGTTATGGTTTGTGAGAGAGGAACTATGTTTGGCTATAATGATTTGATTGTTGATCCACGCAACTTTGAATGGATGAGGGAAGCAAATTGTCCAATTGTAGCGGATGTCACACACTCATTACAACAACCTGCTGGGAAAAAGTTGGAAGGTGGGGGAGTTGCCAGTGGAGGTCTTCGTGAATTGATACCTTGCATTGCGAGGACAGCTGTTGCTGTTGGAGTGGATGGAATTTTTATGGAGGTATATATTCAGAAAAATGCTGTGCATGATGATCCTCTAAATGCTCCAGTGGACGGTCCAACCCAATGGCCTCTGCGCCATTTGGAGGAACTCCTAGTAGAGCTTGTGGCAATAGCTGAAGACTTGGGGACTTCTCCTTGGTAA

Network for GWHGAAZE023453

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00793.21	DAHP_synth_1	15	268	3.80E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01627	kdsA	Metabolic pathways	map01100
K01627	kdsA	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0003824	molecular_function	catalytic activity
GO:0008676	molecular_function	3-deoxy-8-phosphooctulonate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.722
	SRR3591706	second leaf	15.991
	SRR3591707	mature leaf	5.386
	SRR3591708	Shoot apex	20.199
	SRR3591709	Stem	9.058
	SRR3591710	White floral bud	20.387
	SRR3591711	White flower	19.985
	SRR3591712	Green floral bud	29.294
	SRR3591713	Yellow flower	14.130
SRP173429	SRR8316895	Juvenile bud stage	32.620
	SRR8316896	Juvenile bud stage	37.272
	SRR8316897	Juvenile bud stage	21.263
	SRR8316894	Third green stage	15.224
	SRR8316900	Third green stage	46.158
	SRR8316901	Third green stage	42.048
	SRR8316898	Complete white stage	10.495
	SRR8316899	Complete white stage	32.353
	SRR8316903	Complete white stage	13.650
	SRR8316902	Silver flowering stage	4.270
	SRR8316904	Silver flowering stage	4.143
	SRR8316905	Silver flowering stage	3.189
	SRR8316906	Gold flowering stage	13.732
	SRR8316907	Gold flowering stage	9.997
	SRR8316908	Gold flowering stage	10.390
SRP132670	SRR6706286	Control	31.942
	SRR6706287	Light intensity 50%	33.650
	SRR6706288	Light intensity 20%	36.012
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.470
	CNS0095593	Slightly white alabastrum(diploid) 2	29.685
	CNS0095594	Slightly white alabastrum(diploid) 3	27.787
	CNS0095595	Whole white alabastrum(diploid) 2	27.303
	CNS0095596	Whole white alabastrum(diploid) 3	28.771
	CNS0095597	Whole white alabastrum(diploid) 4	16.005
	CNS0095598	Silvery flower (diploied) 1	24.489
	CNS0095599	Silvery flower (diploied) 2	23.608
	CNS0095600	Silvery flower (diploied) 3	17.001
	CNS0095601	Golden flower (diploid) 1	25.197
	CNS0095602	Golden flower (diploid) 2	14.470
	CNS0095603	Golden flower (diploid) 3	16.299
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.451
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.198
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.449
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.855
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.797
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.036
	CNS0095610	Silvery flower (tetraploid) 1	23.085
	CNS0095611	Silvery flower (tetraploid) 2	19.537
	CNS0095612	Silvery flower (tetraploid) 3	14.216
	CNS0095613	Golden flower (tetraploid) 1	8.212
	CNS0095614	Golden flower (tetraploid) 2	15.846
	CNS0095615	Golden flower (tetraploid) 3	8.615
CRA001975	CRR073297	Stem 1	33.939
	CRR073298	Stem 2	27.158
	CRR073299	Stem 3	25.212
	CRR073300	Leaf 1	27.959
	CRR073301	Leaf 2	19.224
	CRR073302	Leaf 3	26.435
	CRR073303	Juvenile bud 1	20.247
	CRR073304	Juvenile bud 2	16.323
	CRR073305	Juvenile bud 3	15.033
	CRR073306	Third green 1	5.960
	CRR073307	Third green 2	10.046
	CRR073308	Third green 3	8.039
	CRR073309	Second white 1	12.198
	CRR073310	Second white 2	8.339
	CRR073311	Second white 3	6.423
	CRR073312	Silver flowering 1	7.164
	CRR073313	Silver flowering 2	10.020
	CRR073314	Silver flowering 3	5.883
	CRR073315	Gold flowering 1	14.031
	CRR073316	Gold flowering 2	15.921
	CRR073317	Gold flowering 3	11.029
	CRR073318	Tawny withering 1	15.232
	CRR073319	Tawny withering 2	22.697
	CRR073320	Tawny withering 3	28.373