Gene detail

Detail information of GWHGAAZE023455

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284278.1	1.166E-179	PREDICTED: peroxidase 73 [Vitis vinifera]
Swissprot	tr\|Q9SZE7\|PER51_ARATH	4E-158	Peroxidase 51 (Precursor)
trEMBL	tr\|F6HSU5\|F6HSU5_VITVI	4E-180	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57755.1}
TAIR10	AT4G37530.1	4E-120	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	9014972	9018902	+
GWHAAZE00000007	mRNA	9014972	9018902	+
GWHAAZE00000007	exon	9014972	9014977	+
GWHAAZE00000007	exon	9016821	9016973	+
GWHAAZE00000007	exon	9017067	9017216	+
GWHAAZE00000007	exon	9017587	9017752	+
GWHAAZE00000007	exon	9018496	9018902	+
GWHAAZE00000007	CDS	9014972	9014977	+
GWHAAZE00000007	CDS	9016821	9016973	+
GWHAAZE00000007	CDS	9017067	9017216	+
GWHAAZE00000007	CDS	9017587	9017752	+
GWHAAZE00000007	CDS	9018496	9018902	+

Transcript Sequence
>GWHTAAZE023485 ATGGAGTATAGCATCGCGCAACTAAGACAAAATTATTACGCGAATATTTGTCCAAACGTTGAAACAACCGTGAGGAACGTTGTGAATACCAAAGTTCAACAAACTTTTGTCACGATTCCTGCAACACTTCGACTCTTCTTCCACGACTGCTTTGTCCAGGGTTGTGATGGTTCAGTTATAATTCAATCAACTGGAACTAACACAGCTGAGAAGGATCACCCCGATAACTTGTCTTTGGCTGGAGATGGATTTGACACTGTGATCAAAGCTAAAGCCGCCGTTGATGCCATCCCAAGTTGCAAAAATAAGTCAGGTGGACCTTCATATGCAGTTGAATTAGGAAGATTAGATGGGCTGAGCTCCACTGCTTCAAGTGTTAATGGAAAGCTTCCTCAGCCTACCTTCAATTTGAATCAGCTCCTTTCCATCTTTGCTGCTAATGGCCTCAACCAAGCAGATATGATTGCTCTCTCAGCGGCCCACACATTAGGATTCTCACACTGTAACAAGTTTGCAAACCGGATATACAATTTCACCCAGCAGAATCCTGTTGACCCGACCCTGGACAAGGGTTACGCGACCCAATTGCAGTCAATGTGCCCGAAGAACGTGGACCCAAGGATAGCAATCAACATGGATCCAAATACTCCCAGAACCTTTGACAATGTCTACTTTCAGAATCTCCAGCAAGGGAAGGGCTTATTCACGTCGGACCAAGTCCTCTTCACAGATAGTCGGTCCAAACCCACTGTAAATACGTGGGCCTCCAATTCTGCGGCTTTTCAGAATGCCTTTGTCACGGCCATGACCAAACTGGGTCGGGTTGGAATCAAAACCGGATCCAATGGAAATATCCGTACTGATTGTTCAGCATTTAATTAA

Network for GWHGAAZE023455

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	25	256	2.40E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.321
	SRR3591706	second leaf	1.637
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.676
	SRR3591709	Stem	1.377
	SRR3591710	White floral bud	0.100
	SRR3591711	White flower	1.960
	SRR3591712	Green floral bud	1.885
	SRR3591713	Yellow flower	0.405
SRP173429	SRR8316895	Juvenile bud stage	1.588
	SRR8316896	Juvenile bud stage	3.632
	SRR8316897	Juvenile bud stage	1.243
	SRR8316894	Third green stage	1.067
	SRR8316900	Third green stage	2.632
	SRR8316901	Third green stage	3.644
	SRR8316898	Complete white stage	0.170
	SRR8316899	Complete white stage	1.029
	SRR8316903	Complete white stage	0.395
	SRR8316902	Silver flowering stage	0.067
	SRR8316904	Silver flowering stage	0.224
	SRR8316905	Silver flowering stage	0.049
	SRR8316906	Gold flowering stage	2.587
	SRR8316907	Gold flowering stage	0.601
	SRR8316908	Gold flowering stage	1.507
SRP132670	SRR6706286	Control	7.545
	SRR6706287	Light intensity 50%	5.938
	SRR6706288	Light intensity 20%	7.522
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.674
	CNS0095593	Slightly white alabastrum(diploid) 2	4.319
	CNS0095594	Slightly white alabastrum(diploid) 3	4.387
	CNS0095595	Whole white alabastrum(diploid) 2	2.147
	CNS0095596	Whole white alabastrum(diploid) 3	1.754
	CNS0095597	Whole white alabastrum(diploid) 4	0.842
	CNS0095598	Silvery flower (diploied) 1	1.888
	CNS0095599	Silvery flower (diploied) 2	2.286
	CNS0095600	Silvery flower (diploied) 3	1.802
	CNS0095601	Golden flower (diploid) 1	4.710
	CNS0095602	Golden flower (diploid) 2	5.236
	CNS0095603	Golden flower (diploid) 3	4.785
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.272
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.267
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.134
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.937
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.335
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	1.236
	CNS0095612	Silvery flower (tetraploid) 3	0.997
	CNS0095613	Golden flower (tetraploid) 1	0.504
	CNS0095614	Golden flower (tetraploid) 2	0.799
	CNS0095615	Golden flower (tetraploid) 3	0.039
CRA001975	CRR073297	Stem 1	3.866
	CRR073298	Stem 2	4.951
	CRR073299	Stem 3	11.173
	CRR073300	Leaf 1	1.950
	CRR073301	Leaf 2	4.080
	CRR073302	Leaf 3	6.122
	CRR073303	Juvenile bud 1	0.354
	CRR073304	Juvenile bud 2	0.295
	CRR073305	Juvenile bud 3	1.031
	CRR073306	Third green 1	0.077
	CRR073307	Third green 2	0.293
	CRR073308	Third green 3	0.318
	CRR073309	Second white 1	0.281
	CRR073310	Second white 2	0.154
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.065
	CRR073313	Silver flowering 2	0.610
	CRR073314	Silver flowering 3	0.574
	CRR073315	Gold flowering 1	0.432
	CRR073316	Gold flowering 2	2.587
	CRR073317	Gold flowering 3	2.372
	CRR073318	Tawny withering 1	40.426
	CRR073319	Tawny withering 2	30.528
	CRR073320	Tawny withering 3	6.014