Detail information of GWHGAAZE023457


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010932211.15.27516E-14PREDICTED: F-box protein At5g07610-like [Elaeis guineensis]
trEMBLtr|M0XA43|M0XA43_HORVD0.000000001Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_58280.1}
TAIR10AT5G62510.10.000009F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene90454459046548+
GWHAAZE00000007mRNA90454459046548+
GWHAAZE00000007exon90454459045509+
GWHAAZE00000007exon90456009046548+
GWHAAZE00000007CDS90454459045509+
GWHAAZE00000007CDS90456009046548+
Transcript Sequence

Network for GWHGAAZE023457

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box46873.60E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.766
SRR3591706second leaf0.257
SRR3591707mature leaf1.086
SRR3591708Shoot apex0.907
SRR3591709Stem0.647
SRR3591710White floral bud1.194
SRR3591711White flower1.047
SRR3591712Green floral bud0.897
SRR3591713Yellow flower0.139
SRP173429 SRR8316895Juvenile bud stage 0.759
SRR8316896Juvenile bud stage 0.867
SRR8316897Juvenile bud stage 0.733
SRR8316894Third green stage 0.744
SRR8316900Third green stage 1.179
SRR8316901Third green stage 0.858
SRR8316898Complete white stage 0.183
SRR8316899Complete white stage 1.489
SRR8316903Complete white stage 0.605
SRR8316902Silver flowering stage0.209
SRR8316904Silver flowering stage0.147
SRR8316905Silver flowering stage0.458
SRR8316906Gold flowering stage 1.001
SRR8316907Gold flowering stage 0.421
SRR8316908Gold flowering stage 0.923
SRP132670SRR6706286Control1.351
SRR6706287Light intensity 50%1.414
SRR6706288Light intensity 20%1.461
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.632
CNS0095593Slightly white alabastrum(diploid) 20.515
CNS0095594Slightly white alabastrum(diploid) 30.417
CNS0095595Whole white alabastrum(diploid) 20.515
CNS0095596Whole white alabastrum(diploid) 30.969
CNS0095597Whole white alabastrum(diploid) 40.269
CNS0095598Silvery flower (diploied) 10.761
CNS0095599Silvery flower (diploied) 20.386
CNS0095600Silvery flower (diploied) 30.895
CNS0095601Golden flower (diploid) 10.482
CNS0095602Golden flower (diploid) 20.799
CNS0095603Golden flower (diploid) 30.420
CNS0095604Slightly white alabastrum(tetraploid) 10.614
CNS0095605Slightly white alabastrum(tetraploid) 20.692
CNS0095606Slightly white alabastrum(tetraploid) 31.028
CNS0095607Whole white alabastrum(tetraploid) 10.576
CNS0095608Whole white alabastrum(tetraploid) 20.339
CNS0095609Whole white alabastrum(tetraploid) 31.195
CNS0095610Silvery flower (tetraploid) 11.240
CNS0095611Silvery flower (tetraploid) 21.488
CNS0095612Silvery flower (tetraploid) 31.084
CNS0095613Golden flower (tetraploid) 10.628
CNS0095614Golden flower (tetraploid) 20.988
CNS0095615Golden flower (tetraploid) 30.222
CRA001975CRR073297Stem 11.535
CRR073298Stem 21.376
CRR073299Stem 31.387
CRR073300Leaf 11.994
CRR073301Leaf 21.739
CRR073302Leaf 31.699
CRR073303Juvenile bud 12.272
CRR073304Juvenile bud 21.208
CRR073305Juvenile bud 31.368
CRR073306Third green 10.267
CRR073307Third green 20.171
CRR073308Third green 30.168
CRR073309Second white 10.000
CRR073310Second white 20.530
CRR073311Second white 30.404
CRR073312Silver flowering 10.267
CRR073313Silver flowering 20.195
CRR073314Silver flowering 30.293
CRR073315Gold flowering 11.713
CRR073316Gold flowering 22.865
CRR073317Gold flowering 31.766
CRR073318Tawny withering 10.760
CRR073319Tawny withering 21.145
CRR073320Tawny withering 30.824