Detail information of GWHGAAZE023458


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007023643.15.01482E-15F-box family protein, putative [Theobroma cacao]
Swissprottr|Q6ICX6|FB329_ARATH0.000001F-box protein At3g57580
trEMBLtr|A0A061G8U3|A0A061G8U3_THECC2E-15F-box family protein, putative {ECO:0000313|EMBL:EOY26265.1}
TAIR10AT1G60370.10.0000009F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene90502149051656+
GWHAAZE00000007mRNA90502149051656+
GWHAAZE00000007exon90502149051656+
GWHAAZE00000007CDS90502149051656+
Transcript Sequence

Network for GWHGAAZE023458

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box34733.00E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.177
SRR3591708Shoot apex0.059
SRR3591709Stem0.000
SRR3591710White floral bud0.273
SRR3591711White flower0.451
SRR3591712Green floral bud0.211
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.018
SRR8316896Juvenile bud stage 0.757
SRR8316897Juvenile bud stage 0.073
SRR8316894Third green stage 0.231
SRR8316900Third green stage 0.746
SRR8316901Third green stage 0.887
SRR8316898Complete white stage 0.313
SRR8316899Complete white stage 1.497
SRR8316903Complete white stage 0.971
SRR8316902Silver flowering stage0.207
SRR8316904Silver flowering stage0.405
SRR8316905Silver flowering stage0.253
SRR8316906Gold flowering stage 0.542
SRR8316907Gold flowering stage 0.722
SRR8316908Gold flowering stage 0.056
SRP132670SRR6706286Control0.240
SRR6706287Light intensity 50%0.226
SRR6706288Light intensity 20%0.298
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.020
CNS0095593Slightly white alabastrum(diploid) 21.160
CNS0095594Slightly white alabastrum(diploid) 32.031
CNS0095595Whole white alabastrum(diploid) 20.636
CNS0095596Whole white alabastrum(diploid) 30.253
CNS0095597Whole white alabastrum(diploid) 40.949
CNS0095598Silvery flower (diploied) 11.796
CNS0095599Silvery flower (diploied) 20.518
CNS0095600Silvery flower (diploied) 31.130
CNS0095601Golden flower (diploid) 11.210
CNS0095602Golden flower (diploid) 21.372
CNS0095603Golden flower (diploid) 31.619
CNS0095604Slightly white alabastrum(tetraploid) 11.121
CNS0095605Slightly white alabastrum(tetraploid) 20.467
CNS0095606Slightly white alabastrum(tetraploid) 30.801
CNS0095607Whole white alabastrum(tetraploid) 10.520
CNS0095608Whole white alabastrum(tetraploid) 20.082
CNS0095609Whole white alabastrum(tetraploid) 30.850
CNS0095610Silvery flower (tetraploid) 11.321
CNS0095611Silvery flower (tetraploid) 20.760
CNS0095612Silvery flower (tetraploid) 31.062
CNS0095613Golden flower (tetraploid) 10.878
CNS0095614Golden flower (tetraploid) 20.834
CNS0095615Golden flower (tetraploid) 31.354
CRA001975CRR073297Stem 10.883
CRR073298Stem 20.499
CRR073299Stem 30.499
CRR073300Leaf 10.805
CRR073301Leaf 20.895
CRR073302Leaf 30.382
CRR073303Juvenile bud 10.337
CRR073304Juvenile bud 20.651
CRR073305Juvenile bud 30.196
CRR073306Third green 10.127
CRR073307Third green 20.085
CRR073308Third green 30.293
CRR073309Second white 10.270
CRR073310Second white 20.587
CRR073311Second white 30.397
CRR073312Silver flowering 10.299
CRR073313Silver flowering 20.310
CRR073314Silver flowering 30.183
CRR073315Gold flowering 10.803
CRR073316Gold flowering 20.900
CRR073317Gold flowering 30.544
CRR073318Tawny withering 10.182
CRR073319Tawny withering 20.633
CRR073320Tawny withering 31.069