Detail information of GWHGAAZE023460


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004231909.10PREDICTED: scarecrow-like protein 32 [Solanum lycopersicum]
Swissprottr|Q9SN22|SCL32_ARATH0Scarecrow-like protein 32
trEMBLtr|K4BD53|K4BD53_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g092570.1.1}
TAIR10AT3G49950.12E-146GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene90585459059789-
GWHAAZE00000007mRNA90585459059789-
GWHAAZE00000007exon90585459059789-
GWHAAZE00000007CDS90585459059789-
Transcript Sequence

Network for GWHGAAZE023460

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS334116.50E-98
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.098
SRR3591706second leaf12.075
SRR3591707mature leaf3.387
SRR3591708Shoot apex8.276
SRR3591709Stem0.000
SRR3591710White floral bud0.090
SRR3591711White flower0.409
SRR3591712Green floral bud0.955
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.660
SRR8316896Juvenile bud stage 0.589
SRR8316897Juvenile bud stage 0.103
SRR8316894Third green stage 0.314
SRR8316900Third green stage 1.257
SRR8316901Third green stage 0.986
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.083
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.394
SRR6706287Light intensity 50%1.449
SRR6706288Light intensity 20%1.611
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.991
CNS0095593Slightly white alabastrum(diploid) 20.553
CNS0095594Slightly white alabastrum(diploid) 30.310
CNS0095595Whole white alabastrum(diploid) 20.380
CNS0095596Whole white alabastrum(diploid) 30.630
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.159
CNS0095599Silvery flower (diploied) 20.858
CNS0095600Silvery flower (diploied) 30.281
CNS0095601Golden flower (diploid) 10.597
CNS0095602Golden flower (diploid) 20.895
CNS0095603Golden flower (diploid) 30.349
CNS0095604Slightly white alabastrum(tetraploid) 10.632
CNS0095605Slightly white alabastrum(tetraploid) 20.724
CNS0095606Slightly white alabastrum(tetraploid) 31.032
CNS0095607Whole white alabastrum(tetraploid) 10.269
CNS0095608Whole white alabastrum(tetraploid) 20.052
CNS0095609Whole white alabastrum(tetraploid) 30.874
CNS0095610Silvery flower (tetraploid) 10.101
CNS0095611Silvery flower (tetraploid) 20.088
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.032
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 13.690
CRR073298Stem 23.009
CRR073299Stem 36.339
CRR073300Leaf 12.728
CRR073301Leaf 22.714
CRR073302Leaf 32.878
CRR073303Juvenile bud 11.773
CRR073304Juvenile bud 23.227
CRR073305Juvenile bud 30.349
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.063
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.186
CRR073316Gold flowering 20.522
CRR073317Gold flowering 30.716
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.002