Detail information of GWHGAAZE023461


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284296.12.8571E-110PREDICTED: LOB domain-containing protein 38 [Vitis vinifera]
Swissprottr|Q9FN11|LBD37_ARATH1E-84LOB domain-containing protein 37
trEMBLtr|D7TT88|D7TT88_VITVI1E-110Putative uncharacterized protein {ECO:0000313|EMBL:CBI33710.3}
TAIR10AT5G67420.12E-68LOB domain-containing protein 37

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene91330519134196-
GWHAAZE00000007mRNA91330519134196-
GWHAAZE00000007exon91339729134196-
GWHAAZE00000007exon91330519133874-
GWHAAZE00000007five_prime_UTR91341569134196-
GWHAAZE00000007CDS91339729134155-
GWHAAZE00000007CDS91333849133874-
GWHAAZE00000007three_prime_UTR91330519133383-
Transcript Sequence

Network for GWHGAAZE023461

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB21009.70E-26
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf86.807
SRR3591706second leaf41.921
SRR3591707mature leaf45.907
SRR3591708Shoot apex94.656
SRR3591709Stem59.458
SRR3591710White floral bud25.424
SRR3591711White flower42.537
SRR3591712Green floral bud12.766
SRR3591713Yellow flower36.272
SRP173429 SRR8316895Juvenile bud stage 80.513
SRR8316896Juvenile bud stage 82.874
SRR8316897Juvenile bud stage 51.989
SRR8316894Third green stage 21.605
SRR8316900Third green stage 58.455
SRR8316901Third green stage 72.861
SRR8316898Complete white stage 18.022
SRR8316899Complete white stage 68.672
SRR8316903Complete white stage 29.624
SRR8316902Silver flowering stage18.323
SRR8316904Silver flowering stage11.480
SRR8316905Silver flowering stage10.554
SRR8316906Gold flowering stage 34.546
SRR8316907Gold flowering stage 56.244
SRR8316908Gold flowering stage 28.697
SRP132670SRR6706286Control42.867
SRR6706287Light intensity 50%36.769
SRR6706288Light intensity 20%36.304
CNP0000432CNS0095592Slightly white alabastrum(diploid) 170.043
CNS0095593Slightly white alabastrum(diploid) 288.438
CNS0095594Slightly white alabastrum(diploid) 374.036
CNS0095595Whole white alabastrum(diploid) 250.850
CNS0095596Whole white alabastrum(diploid) 344.710
CNS0095597Whole white alabastrum(diploid) 435.368
CNS0095598Silvery flower (diploied) 1133.985
CNS0095599Silvery flower (diploied) 2109.748
CNS0095600Silvery flower (diploied) 375.612
CNS0095601Golden flower (diploid) 191.127
CNS0095602Golden flower (diploid) 2101.813
CNS0095603Golden flower (diploid) 395.801
CNS0095604Slightly white alabastrum(tetraploid) 131.422
CNS0095605Slightly white alabastrum(tetraploid) 234.268
CNS0095606Slightly white alabastrum(tetraploid) 342.018
CNS0095607Whole white alabastrum(tetraploid) 123.262
CNS0095608Whole white alabastrum(tetraploid) 215.149
CNS0095609Whole white alabastrum(tetraploid) 318.792
CNS0095610Silvery flower (tetraploid) 139.570
CNS0095611Silvery flower (tetraploid) 247.839
CNS0095612Silvery flower (tetraploid) 347.129
CNS0095613Golden flower (tetraploid) 157.236
CNS0095614Golden flower (tetraploid) 240.681
CNS0095615Golden flower (tetraploid) 393.879
CRA001975CRR073297Stem 193.303
CRR073298Stem 284.077
CRR073299Stem 3116.764
CRR073300Leaf 180.825
CRR073301Leaf 2133.229
CRR073302Leaf 383.249
CRR073303Juvenile bud 1112.858
CRR073304Juvenile bud 2102.501
CRR073305Juvenile bud 3208.500
CRR073306Third green 1173.592
CRR073307Third green 2180.891
CRR073308Third green 3157.276
CRR073309Second white 1129.098
CRR073310Second white 292.240
CRR073311Second white 381.339
CRR073312Silver flowering 1150.638
CRR073313Silver flowering 2134.419
CRR073314Silver flowering 3100.330
CRR073315Gold flowering 189.832
CRR073316Gold flowering 286.242
CRR073317Gold flowering 379.705
CRR073318Tawny withering 1103.481
CRR073319Tawny withering 286.711
CRR073320Tawny withering 3119.218