Gene detail

Detail information of GWHGAAZE023463

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652717.1	0	PREDICTED: probable N-acetyltransferase HLS1 [Vitis vinifera]
Swissprot	tr\|O64815\|HLS1L_ARATH	0	Probable N-acetyltransferase HLS1-like
trEMBL	tr\|D7TT81\|D7TT81_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33703.3}
TAIR10	AT2G23060.1	7E-171	Acyl-CoA N-acyltransferases (NAT) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	9309832	9311373	+
GWHAAZE00000007	mRNA	9309832	9311373	+
GWHAAZE00000007	exon	9309832	9310011	+
GWHAAZE00000007	exon	9310112	9310308	+
GWHAAZE00000007	exon	9310509	9311373	+
GWHAAZE00000007	CDS	9309832	9310011	+
GWHAAZE00000007	CDS	9310112	9310308	+
GWHAAZE00000007	CDS	9310509	9311373	+

Transcript Sequence
>GWHTAAZE023493 ATGGGAGAGAAAAATGGTGCTGTTTATGTTAGAGAGTTCGACCCACAAAAAGATTGCAGTGGAGTTGAAGAGGTTGAGAGAAAGTGTGAGGTGGGACCCAGTGGAAAGCTCTCTCTCTTCACTGACCTTTTGGGTGACCCTATTTGCAGGGTTCGCAATTCCCCTGCCTATCTAATGCTGGTGGCTGAGATGGTGGTGGATAAAGAAAACAAAGAAACAAAAGAGATAGTTGGAATGATAAGGGGTTGTATCAAGACGGTTACATGCGGCAAGAGGTTTTCTAGAACCGGGAAAAATGGCAACGATCCCTTAAAGCCCCTCCCTGTCTATACTAAAGTCGCTTACATCTTAGGCCTACGTGTCTCTCCCTCTCACAGGCGAATGAAGATAGGGTTGAAACTAGTAAGCAGAATAGAGGAGTGGTTCAGAGAAAACGGGGCCGAATATTCCTACATAGCCACAGAAAACGACAACCAACCTTCCGTTAATCTCTTCACCAACAAATGCGGCTACACCAAGTTCCGTACACCCTCAATCCTGGTCCAACCCGTTTACGCCCACCGGGTCCGGATCCCAAACCGGGTCACCATCATCAAGCTCACCCCGCCTGAAGCTGAGTCATTTTACCGCCGCCGCTTCTCCACCACCGAGTTCTTCCCCCGGGACATCGACTCTGTCCTCAACAACAAGCTAAATCTGGGCACTTTTCTAGCTGTACCGAGCAGCACATTTCCACCTGGGTCATGGGTCGGGTCGGATAATTTCCTTGCCAACCTGCCCGAGTCGTGGGCCGTTTTGAGCGTGTGGAACTGTAAGGACGTTTTCACGCTCGAGGTCAAAGGCGCGTCGCGCGTGAAGAAGGGTTTTGCTAAAACGACCCGGATAGTGGACCGGGTTTTACCGTGGCTTCGGTTACCCTCGGTACCGGAGGTTTTTAGGCCATTTGGGCTCCATTTTCTATATGGGCTCGGTGGTGAGGGCCCACTTGCGGTGAAATTTGTAAGGGCACTTTGTGGGTTTGCTCATAATTTGGCTAAAGAGAAGGGGTGTGGGGTGGTGGCAACTGAGGTGTTGGGTGTCGAGCCGCTCAGATTAGGGATTCCGCACTGGAAAAAGCTATCGTGCGCCGAGGACCTATGGTGCATCAAGAGGCTAGGGGAAGACTACAGTGACGGGTCTGTGGGTGACTGGACAAAGTCACCACCTGGTCTGTCCATTTTTGTTGATCCAAGAGAGTTCTGA

Network for GWHGAAZE023463

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00583.26	Acetyltransf_1	70	171	3.90E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GNAT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008080	molecular_function	N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.993
	SRR3591706	second leaf	0.173
	SRR3591707	mature leaf	3.004
	SRR3591708	Shoot apex	0.481
	SRR3591709	Stem	17.159
	SRR3591710	White floral bud	6.103
	SRR3591711	White flower	2.902
	SRR3591712	Green floral bud	1.606
	SRR3591713	Yellow flower	0.179
SRP173429	SRR8316895	Juvenile bud stage	0.455
	SRR8316896	Juvenile bud stage	1.186
	SRR8316897	Juvenile bud stage	0.174
	SRR8316894	Third green stage	0.470
	SRR8316900	Third green stage	2.647
	SRR8316901	Third green stage	1.912
	SRR8316898	Complete white stage	0.347
	SRR8316899	Complete white stage	3.360
	SRR8316903	Complete white stage	1.585
	SRR8316902	Silver flowering stage	0.083
	SRR8316904	Silver flowering stage	0.083
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.203
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.265
SRP132670	SRR6706286	Control	2.374
	SRR6706287	Light intensity 50%	2.468
	SRR6706288	Light intensity 20%	1.976
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.464
	CNS0095593	Slightly white alabastrum(diploid) 2	1.997
	CNS0095594	Slightly white alabastrum(diploid) 3	2.811
	CNS0095595	Whole white alabastrum(diploid) 2	1.712
	CNS0095596	Whole white alabastrum(diploid) 3	0.645
	CNS0095597	Whole white alabastrum(diploid) 4	1.632
	CNS0095598	Silvery flower (diploied) 1	6.402
	CNS0095599	Silvery flower (diploied) 2	2.648
	CNS0095600	Silvery flower (diploied) 3	0.778
	CNS0095601	Golden flower (diploid) 1	0.910
	CNS0095602	Golden flower (diploid) 2	0.852
	CNS0095603	Golden flower (diploid) 3	0.921
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.590
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.781
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.321
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.884
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.487
	CNS0095610	Silvery flower (tetraploid) 1	0.837
	CNS0095611	Silvery flower (tetraploid) 2	1.582
	CNS0095612	Silvery flower (tetraploid) 3	0.361
	CNS0095613	Golden flower (tetraploid) 1	0.029
	CNS0095614	Golden flower (tetraploid) 2	0.068
	CNS0095615	Golden flower (tetraploid) 3	0.181
CRA001975	CRR073297	Stem 1	0.748
	CRR073298	Stem 2	0.276
	CRR073299	Stem 3	0.429
	CRR073300	Leaf 1	1.167
	CRR073301	Leaf 2	1.266
	CRR073302	Leaf 3	0.343
	CRR073303	Juvenile bud 1	0.572
	CRR073304	Juvenile bud 2	0.299
	CRR073305	Juvenile bud 3	0.848
	CRR073306	Third green 1	0.508
	CRR073307	Third green 2	0.166
	CRR073308	Third green 3	0.324
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.363
	CRR073316	Gold flowering 2	0.148
	CRR073317	Gold flowering 3	0.170
	CRR073318	Tawny withering 1	0.035
	CRR073319	Tawny withering 2	0.781
	CRR073320	Tawny withering 3	0.519