Gene detail

Detail information of GWHGAAZE023478

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804717.1	0	PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 [Nicotiana sylvestris]
COG	YP_005845634.1	2E-46	peptidyl-prolyl cis-trans isomerase A
Swissprot	tr\|Q9FJX0\|PPIL2_ARATH	0	Peptidyl-prolyl cis-trans isomerase CYP65 {ECO:0000305}
trEMBL	tr\|K4BD34\|K4BD34_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g092380.2.1}
TAIR10	AT5G67530.1	0	plant U-box 49

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	9732753	9738878	+
GWHAAZE00000007	mRNA	9732753	9738878	+
GWHAAZE00000007	exon	9732753	9732880	+
GWHAAZE00000007	exon	9732987	9733049	+
GWHAAZE00000007	exon	9733872	9733975	+
GWHAAZE00000007	exon	9735034	9735125	+
GWHAAZE00000007	exon	9735228	9735317	+
GWHAAZE00000007	exon	9735649	9735724	+
GWHAAZE00000007	exon	9735812	9736182	+
GWHAAZE00000007	exon	9738172	9738428	+
GWHAAZE00000007	exon	9738524	9738878	+
GWHAAZE00000007	CDS	9732753	9732880	+
GWHAAZE00000007	CDS	9732987	9733049	+
GWHAAZE00000007	CDS	9733872	9733975	+
GWHAAZE00000007	CDS	9735034	9735125	+
GWHAAZE00000007	CDS	9735228	9735317	+
GWHAAZE00000007	CDS	9735649	9735724	+
GWHAAZE00000007	CDS	9735812	9736182	+
GWHAAZE00000007	CDS	9738172	9738428	+
GWHAAZE00000007	CDS	9738524	9738878	+

Transcript Sequence
>GWHTAAZE023508 ATGGGGAAGAAACAGCACAGCAAAGATCGAATGTTCATCACGAAGACGGAGTGGGCCACCGAGTGGGGCGGCGCCAAATCCAAGGAACTCCGCACCCCTTTCAAACGCCTTCCTTTCTATTGCTGCGCTCTCACATTTACGCCATTTGAGGATCCAGTATGCACGGAGGATGGCAGCGTCTTCGACATAATGCACATAGTCCCGTACATTAGGAAGTTCGGGAAGCATCCTGTTACTGGAGCTCCACTCAAACATGAGGATCTCATCCCGCTTGTTTTCCACAAGAATGCCGAAGGAGAATTTCATTGCCCAGTTTTGAACAAGGTTTTCACAGAATTTACACACATAGTTGCTGTGAAGACAACAGGAAATGTGTTCTGCTACGAGGCTATTAAAGAATTAAACCTCAAAACCAAGAACTGGAAAGAACTTCTGACTGATGAACCATTCAGAAGGGAAGATCTTATAACAATTCAGAATCCCAATGCACTTGACACCAAGGTTCTCGTGGAATTTGATCACGTGAAAAGAAGTTTGAAAGTTGATGATGAAGAACTAAAGAAATTGGAGACAGATCCAGCATATAACATAAATATGACTGGGGATATCAAACAGATGCTTAAGGAACTTGGAACAGAGAAAGGAAAGGAAATTGCATTACATGGTGGAGGTGGAGACAAGGCACAAAATGAAAGAGCTAATGCACTTGTAGCCATTTTAGCTGCAAGATCTCGCATTAAAGAGGATTCCAAATCAAAAAATGATGAAGTTAAAGCCCAGCCCGGTTACAGTATTGTAGACGCTGCATCGGCCTCTGTGCACGGAAGAAGTGCTGCTGCAGCAAAGGCTGGATCGAGTGATAAAACTGCAGCTCGTATAGCTATGCACATGGCTGGTGATAGGACACCAGTAAATGCGAAAATGGTAAAGAGTCGTTACACAACTGGTGCTGCTTCGAGATCCTTCACATCTACTTCATATGATCCTGTGACAACAAATGAATACGAGTATGTCAAAGTGGAGAAAAATCCCAAGAAAAAAGGATATGTTCAGTTGCAAACAACACATGGTGATTTGAATATTGAGCTGCACTGTGACATAGCTCCGAGGACGTGTGAGAACTTCATCACTCTATGTGAACGAGGCTATTATAATGGTGTAGTTTTTCATAGAAATATAAGGAACTTTATGATCCAAGGTGGTGATCCTACTGGGACTGGGAGAGGAGGCGAATCCATATGGGGAAAGCACTTCAAAGACGAAGTGAACTCCAAGTTGCTTCACTCTGGGAGGGGTGTAGTTAGCATGGCAAACAATGGGCCCCACACAAATGGTTCACAGTTTTTCATACTGTACAAGTCTGCAACTCATTTGAACTTCAAGCACACAGTCTTTGGTGGAGTTGTTGGAGGCTTGACTACGTTGTCGACTATGGAGAAGGTCCCTGTTGATGATGACGATCGGCCTCTGGTGAGTGCACCCCACCTTCCCCCTCTTTCTCTCTCTTCTCTTCTTCTCACCATCTTTGATTTTTAG

Network for GWHGAAZE023478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00160.22	Pro_isomerase	349	489	1.00E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10598	PPIL2, CYC4, CHP60	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0000413	biological_process	protein peptidyl-prolyl isomerization
GO:0006457	biological_process	protein folding
GO:0004842	molecular_function	ubiquitin-protein transferase activity
GO:0003755	molecular_function	peptidyl-prolyl cis-trans isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.767
	SRR3591706	second leaf	15.525
	SRR3591707	mature leaf	14.768
	SRR3591708	Shoot apex	20.868
	SRR3591709	Stem	16.775
	SRR3591710	White floral bud	23.175
	SRR3591711	White flower	28.138
	SRR3591712	Green floral bud	24.302
	SRR3591713	Yellow flower	28.167
SRP173429	SRR8316895	Juvenile bud stage	8.109
	SRR8316896	Juvenile bud stage	9.850
	SRR8316897	Juvenile bud stage	4.825
	SRR8316894	Third green stage	5.284
	SRR8316900	Third green stage	15.427
	SRR8316901	Third green stage	15.511
	SRR8316898	Complete white stage	7.296
	SRR8316899	Complete white stage	20.630
	SRR8316903	Complete white stage	13.408
	SRR8316902	Silver flowering stage	7.997
	SRR8316904	Silver flowering stage	15.442
	SRR8316905	Silver flowering stage	6.046
	SRR8316906	Gold flowering stage	19.907
	SRR8316907	Gold flowering stage	15.839
	SRR8316908	Gold flowering stage	18.457
SRP132670	SRR6706286	Control	11.616
	SRR6706287	Light intensity 50%	12.021
	SRR6706288	Light intensity 20%	13.797
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.400
	CNS0095593	Slightly white alabastrum(diploid) 2	4.881
	CNS0095594	Slightly white alabastrum(diploid) 3	5.279
	CNS0095595	Whole white alabastrum(diploid) 2	4.833
	CNS0095596	Whole white alabastrum(diploid) 3	3.367
	CNS0095597	Whole white alabastrum(diploid) 4	6.153
	CNS0095598	Silvery flower (diploied) 1	9.594
	CNS0095599	Silvery flower (diploied) 2	12.072
	CNS0095600	Silvery flower (diploied) 3	17.219
	CNS0095601	Golden flower (diploid) 1	7.653
	CNS0095602	Golden flower (diploid) 2	17.089
	CNS0095603	Golden flower (diploid) 3	16.317
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.752
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.609
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.014
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.293
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.954
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.210
	CNS0095610	Silvery flower (tetraploid) 1	19.849
	CNS0095611	Silvery flower (tetraploid) 2	19.612
	CNS0095612	Silvery flower (tetraploid) 3	18.443
	CNS0095613	Golden flower (tetraploid) 1	10.597
	CNS0095614	Golden flower (tetraploid) 2	16.260
	CNS0095615	Golden flower (tetraploid) 3	17.890
CRA001975	CRR073297	Stem 1	14.032
	CRR073298	Stem 2	11.824
	CRR073299	Stem 3	11.022
	CRR073300	Leaf 1	15.593
	CRR073301	Leaf 2	13.345
	CRR073302	Leaf 3	11.455
	CRR073303	Juvenile bud 1	11.331
	CRR073304	Juvenile bud 2	11.099
	CRR073305	Juvenile bud 3	11.242
	CRR073306	Third green 1	9.258
	CRR073307	Third green 2	9.575
	CRR073308	Third green 3	9.126
	CRR073309	Second white 1	6.629
	CRR073310	Second white 2	12.072
	CRR073311	Second white 3	12.400
	CRR073312	Silver flowering 1	9.322
	CRR073313	Silver flowering 2	7.592
	CRR073314	Silver flowering 3	7.576
	CRR073315	Gold flowering 1	6.022
	CRR073316	Gold flowering 2	12.543
	CRR073317	Gold flowering 3	4.710
	CRR073318	Tawny withering 1	12.054
	CRR073319	Tawny withering 2	16.329
	CRR073320	Tawny withering 3	13.432