Detail information of GWHGAAZE023479


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010652703.10PREDICTED: protein SHORT-ROOT isoform X1 [Vitis vinifera]
Swissprottr|Q9SZF7|SHR_ARATH1E-178Protein SHORT-ROOT
trEMBLtr|F6HSS8|F6HSS8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB57738.1}
TAIR10AT4G37650.17E-143GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene97977649799053-
GWHAAZE00000007mRNA97977649799053-
GWHAAZE00000007exon97977649799053-
GWHAAZE00000007CDS97977649799053-
Transcript Sequence

Network for GWHGAAZE023479

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS464282.20E-97
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf83.469
SRR3591706second leaf25.152
SRR3591707mature leaf8.546
SRR3591708Shoot apex69.419
SRR3591709Stem67.323
SRR3591710White floral bud18.365
SRR3591711White flower12.800
SRR3591712Green floral bud19.105
SRR3591713Yellow flower1.661
SRP173429 SRR8316895Juvenile bud stage 6.149
SRR8316896Juvenile bud stage 4.680
SRR8316897Juvenile bud stage 1.877
SRR8316894Third green stage 1.326
SRR8316900Third green stage 3.508
SRR8316901Third green stage 8.154
SRR8316898Complete white stage 2.116
SRR8316899Complete white stage 20.538
SRR8316903Complete white stage 3.753
SRR8316902Silver flowering stage0.670
SRR8316904Silver flowering stage0.635
SRR8316905Silver flowering stage0.456
SRR8316906Gold flowering stage 0.302
SRR8316907Gold flowering stage 0.593
SRR8316908Gold flowering stage 0.496
SRP132670SRR6706286Control6.470
SRR6706287Light intensity 50%7.654
SRR6706288Light intensity 20%7.177
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.047
CNS0095593Slightly white alabastrum(diploid) 28.037
CNS0095594Slightly white alabastrum(diploid) 36.339
CNS0095595Whole white alabastrum(diploid) 23.198
CNS0095596Whole white alabastrum(diploid) 32.966
CNS0095597Whole white alabastrum(diploid) 44.764
CNS0095598Silvery flower (diploied) 13.785
CNS0095599Silvery flower (diploied) 22.219
CNS0095600Silvery flower (diploied) 31.063
CNS0095601Golden flower (diploid) 12.776
CNS0095602Golden flower (diploid) 21.588
CNS0095603Golden flower (diploid) 31.228
CNS0095604Slightly white alabastrum(tetraploid) 14.199
CNS0095605Slightly white alabastrum(tetraploid) 22.923
CNS0095606Slightly white alabastrum(tetraploid) 314.628
CNS0095607Whole white alabastrum(tetraploid) 12.958
CNS0095608Whole white alabastrum(tetraploid) 20.413
CNS0095609Whole white alabastrum(tetraploid) 30.947
CNS0095610Silvery flower (tetraploid) 10.927
CNS0095611Silvery flower (tetraploid) 20.650
CNS0095612Silvery flower (tetraploid) 31.484
CNS0095613Golden flower (tetraploid) 10.497
CNS0095614Golden flower (tetraploid) 20.774
CNS0095615Golden flower (tetraploid) 30.118
CRA001975CRR073297Stem 116.650
CRR073298Stem 213.984
CRR073299Stem 332.902
CRR073300Leaf 111.875
CRR073301Leaf 211.047
CRR073302Leaf 314.404
CRR073303Juvenile bud 117.240
CRR073304Juvenile bud 212.499
CRR073305Juvenile bud 326.580
CRR073306Third green 110.465
CRR073307Third green 219.741
CRR073308Third green 314.772
CRR073309Second white 10.225
CRR073310Second white 21.486
CRR073311Second white 30.202
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.717
CRR073314Silver flowering 30.444
CRR073315Gold flowering 113.089
CRR073316Gold flowering 217.851
CRR073317Gold flowering 316.009
CRR073318Tawny withering 1118.211
CRR073319Tawny withering 266.590
CRR073320Tawny withering 3145.117