Gene detail

Detail information of GWHGAAZE023497

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009630408.1	0	PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X2 [Nicotiana tomentosiformis]
COG	YP_001352869.1	3E-58	N-acetylglutamate synthase
Swissprot	tr\|Q84JF4\|NAGS1_ARATH	0	Probable amino-acid acetyltransferase NAGS1, chloroplastic (Precursor)
trEMBL	tr\|M1JBI9\|M1JBI9_SOLME	0	Calcium-dependent protein kinase 2 {ECO:0000313\|EMBL:AGE83531.1} (Fragment)
TAIR10	AT2G22910.1	0	N-acetyl-l-glutamate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	10637763	10645079	-
GWHAAZE00000007	mRNA	10637763	10645079	-
GWHAAZE00000007	exon	10637763	10637877	-
GWHAAZE00000007	exon	10638660	10638775	-
GWHAAZE00000007	exon	10639335	10639433	-
GWHAAZE00000007	exon	10639524	10639635	-
GWHAAZE00000007	exon	10639840	10639937	-
GWHAAZE00000007	exon	10641605	10642031	-
GWHAAZE00000007	exon	10642618	10642769	-
GWHAAZE00000007	exon	10642941	10643146	-
GWHAAZE00000007	exon	10643876	10643980	-
GWHAAZE00000007	exon	10644680	10645079	-
GWHAAZE00000007	CDS	10644680	10645079	-
GWHAAZE00000007	CDS	10643876	10643980	-
GWHAAZE00000007	CDS	10642941	10643146	-
GWHAAZE00000007	CDS	10642618	10642769	-
GWHAAZE00000007	CDS	10641605	10642031	-
GWHAAZE00000007	CDS	10639840	10639937	-
GWHAAZE00000007	CDS	10639524	10639635	-
GWHAAZE00000007	CDS	10639335	10639433	-
GWHAAZE00000007	CDS	10638660	10638775	-
GWHAAZE00000007	CDS	10637763	10637877	-

Transcript Sequence
>GWHTAAZE023527 ATGGCGACTTCACCTTCACCCCCTTTCAATTGCTTTCCATTCCAAAACCGGAACATTGTTTGGCGGCCAAGAAACATTGCGGGAGAGAGTTTTAGCGGTGGTTTCCGCTCGATAAAACTATTGTTTTCAAACAATAAAGGAATTGCAAGGTGTAATGTTTGGGAGGAACCAGTGAGTGGTGGTAGTGCTAATTCAATTTCAGTTGGTGATACCACCAATTCTTCTATGAAAGAGGATCGGTTTGTGCGATTTTTCCGGGAAGCTTGGCCATATTTTCAAGCACACCGAGGCAGTACCTTTCTTGTTTTAATTTCTGCTGAAATTCTCGACAGCCCTTATTTGTATCCCATTCTTATGGCAACTTTCCACTTTCTTCTGTTTTTGCCCCCAATTTGTCATGTATGTTATTTAATGCAGGACATCTCTCTCCTTCATGGTTTGGGGATCAAATTTGTTCTTGCTCCAGGGACCCATGTGCAAATTGACAAGTTGCTAGCTGAGAGAGGAAAAGAGGCCAAGTATGTTGGACGATACAGAATTACAGATTCTGATTCTCTCCAGGCGGCCATGGATGCAGCTGGTAGAATTCGTATTATGATAGAGGCAAAGCTATCTCCTGGGCCCTCCTTATGTAATATACGTCGACATGGTGACAATAGTCGCTGGCATGATGGTGTCAGTGTTGTTAGCGGTAATTTTCTTGCAGCTAAGCGAAGAGGAGTTGTTGAAGGCATTGATTATGGTGCAACAGGTGAAGTAAAGAAAATAGACATTTCACGTATTCGTGAAAGGCTTGACCAAGATTCTATAGTGATCTTATGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAATTGCAACACATATGAAGTCACTACAGCTTGTGTATTGGCTCTTGGGGCGGAGAAAGTTATTTGCATTATAGATGGTCCAATTCTTGATGAATCTGGCCGTCTTATCCGCTTTTTGACTCTTCAAGATGCAGACATGTTGGTCCGCAAACGGGCAAAGCAAAGTGAAATAGCTGCTAATTATGTAAAAGCCGTTGATCAGGAAGATCATCCCAATTGGTTTGGCCACGGTGATTCCAATGGAATGGTCCCTTCACAGAACGGAAATTATTTAAGGGAGCATTATAATGCAACATTCCAGAATGGTGTTGGTTTTGACAGCGGGAATGGGCTATGGGCCAGTGAAGAACAGGGCTTTGCAATTGGGGGTCTAGAGAGGCTGAGTCGACTAAACGGTTACCTTTCAGAATTGGCCGCTGCAGCTTTTGTGTGTAGAGGAGGTGTTCAAAGAGTTCATCTATTAGACGGCACAATTGCTGGAGTTTTATTGAAGGAGTTGTTTCAAAGAGATGGTGTCAGGACAATGGTGGCTAGTGATGTCTATGAAGGAACACGAATGGCTAAGGTAACAGATTTTGACGCAATAAGACAGATTATAAAACCTTTAGAGGAATCAGGCACATTGGTCAAGAGGATAGATGAAGAGCTACTTGAAGCATTGGATTCATTCATTGTTGTGGAGAGGTTGCTTCTATTGCTGTTTCTCCTGATTGCCATGGACAAGGACAGGGTGACAAGTTGCTCGTTTACGATTTTTTTTTTTGCAGATTATATTGAGAAGAAGGCATCTTCTCTTGGACTGGAAATGCTTTTCCTGCTTACAACCCGCACGGCAGGTTGGTACGCCCTTTTAATTTCACCGTTTGTGAGGCGGGGCTTCGCGGAGTGTTCCATAGATTCATTACCAGCTGAGAGAAGGAAAAAGATTAATCTATCACGCAAGTCTAAAGTATTATACAAAGAAGCTGCTACCTGA

Network for GWHGAAZE023497

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14682	argAB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006526	biological_process	arginine biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0004042	molecular_function	acetyl-CoA:L-glutamate N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.484
	SRR3591706	second leaf	0.144
	SRR3591707	mature leaf	0.270
	SRR3591708	Shoot apex	0.331
	SRR3591709	Stem	0.321
	SRR3591710	White floral bud	0.316
	SRR3591711	White flower	0.314
	SRR3591712	Green floral bud	0.225
	SRR3591713	Yellow flower	1.320
SRP173429	SRR8316895	Juvenile bud stage	3.925
	SRR8316896	Juvenile bud stage	7.053
	SRR8316897	Juvenile bud stage	2.903
	SRR8316894	Third green stage	3.651
	SRR8316900	Third green stage	5.825
	SRR8316901	Third green stage	6.310
	SRR8316898	Complete white stage	2.341
	SRR8316899	Complete white stage	7.592
	SRR8316903	Complete white stage	4.592
	SRR8316902	Silver flowering stage	3.012
	SRR8316904	Silver flowering stage	3.803
	SRR8316905	Silver flowering stage	1.860
	SRR8316906	Gold flowering stage	7.340
	SRR8316907	Gold flowering stage	7.426
	SRR8316908	Gold flowering stage	6.981
SRP132670	SRR6706286	Control	5.572
	SRR6706287	Light intensity 50%	6.036
	SRR6706288	Light intensity 20%	6.473
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.715
	CNS0095593	Slightly white alabastrum(diploid) 2	6.728
	CNS0095594	Slightly white alabastrum(diploid) 3	5.587
	CNS0095595	Whole white alabastrum(diploid) 2	6.258
	CNS0095596	Whole white alabastrum(diploid) 3	5.719
	CNS0095597	Whole white alabastrum(diploid) 4	5.165
	CNS0095598	Silvery flower (diploied) 1	9.122
	CNS0095599	Silvery flower (diploied) 2	6.491
	CNS0095600	Silvery flower (diploied) 3	4.465
	CNS0095601	Golden flower (diploid) 1	6.933
	CNS0095602	Golden flower (diploid) 2	5.179
	CNS0095603	Golden flower (diploid) 3	5.699
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.466
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.102
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.068
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.353
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.368
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.586
	CNS0095610	Silvery flower (tetraploid) 1	4.540
	CNS0095611	Silvery flower (tetraploid) 2	3.405
	CNS0095612	Silvery flower (tetraploid) 3	4.085
	CNS0095613	Golden flower (tetraploid) 1	4.215
	CNS0095614	Golden flower (tetraploid) 2	5.649
	CNS0095615	Golden flower (tetraploid) 3	4.191
CRA001975	CRR073297	Stem 1	7.090
	CRR073298	Stem 2	6.094
	CRR073299	Stem 3	2.620
	CRR073300	Leaf 1	6.679
	CRR073301	Leaf 2	6.967
	CRR073302	Leaf 3	3.043
	CRR073303	Juvenile bud 1	1.620
	CRR073304	Juvenile bud 2	1.082
	CRR073305	Juvenile bud 3	1.769
	CRR073306	Third green 1	0.670
	CRR073307	Third green 2	0.455
	CRR073308	Third green 3	0.502
	CRR073309	Second white 1	0.397
	CRR073310	Second white 2	0.747
	CRR073311	Second white 3	0.637
	CRR073312	Silver flowering 1	0.287
	CRR073313	Silver flowering 2	0.284
	CRR073314	Silver flowering 3	0.287
	CRR073315	Gold flowering 1	1.075
	CRR073316	Gold flowering 2	1.771
	CRR073317	Gold flowering 3	0.304
	CRR073318	Tawny withering 1	2.715
	CRR073319	Tawny withering 2	5.000
	CRR073320	Tawny withering 3	3.749