Gene detail

Detail information of GWHGAAZE023500

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003635452.2	0	PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic [Vitis vinifera]
COG	YP_001352869.1	5E-84	N-acetylglutamate synthase
Swissprot	tr\|Q84JF4\|NAGS1_ARATH	0	Probable amino-acid acetyltransferase NAGS1, chloroplastic (Precursor)
trEMBL	tr\|M1JBI9\|M1JBI9_SOLME	0	Calcium-dependent protein kinase 2 {ECO:0000313\|EMBL:AGE83531.1} (Fragment)
TAIR10	AT2G22910.1	0	N-acetyl-l-glutamate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	10710763	10720292	-
GWHAAZE00000007	mRNA	10710763	10720292	-
GWHAAZE00000007	exon	10719960	10720292	-
GWHAAZE00000007	exon	10717894	10718121	-
GWHAAZE00000007	exon	10717013	10717100	-
GWHAAZE00000007	exon	10716084	10716289	-
GWHAAZE00000007	exon	10715761	10715912	-
GWHAAZE00000007	exon	10714739	10715165	-
GWHAAZE00000007	exon	10712921	10713018	-
GWHAAZE00000007	exon	10712600	10712711	-
GWHAAZE00000007	exon	10712350	10712509	-
GWHAAZE00000007	exon	10711696	10711768	-
GWHAAZE00000007	exon	10710763	10710898	-
GWHAAZE00000007	CDS	10719960	10720292	-
GWHAAZE00000007	CDS	10717894	10718121	-
GWHAAZE00000007	CDS	10717013	10717100	-
GWHAAZE00000007	CDS	10716084	10716289	-
GWHAAZE00000007	CDS	10715761	10715912	-
GWHAAZE00000007	CDS	10714739	10715165	-
GWHAAZE00000007	CDS	10712921	10713018	-
GWHAAZE00000007	CDS	10712600	10712711	-
GWHAAZE00000007	CDS	10712350	10712509	-
GWHAAZE00000007	CDS	10711696	10711768	-
GWHAAZE00000007	CDS	10710763	10710898	-

Transcript Sequence
>GWHTAAZE023530 ATGTCTGTATCAAAATCAAGGCCAAGTGGGTCCAATCTTTGCTGCAGAGCCTCGGAAGAGATTCGGGTTCGGCAATTTAGCAGCAAATTTGGAGTGTGTTTGGGAATGGGAAGAATTGGAGAGAGGAAAAGTCAGGGTGTGAGGTGCTGCGGCGGAAGGAGTGGGGGCAGTGGAAAGGAATGGAATTGGAATTCGAGGGAGGAAAATGGGAAGGAGTTTGTGAAAATGATGAGGGAAGCTGAGGCGTATTTTAGAGCACATAGAGGCGGCAAATTCCTTGTTATATTATCTAGTCAAGTTATAGAGAGTGCTTATTTGGGTCCAATACTTGAGGAAACAGAGAGTGGCGGTAGTGCTAATTCAATTTCACTTGATGATACCACCAATTCTTCTATGAAAGAGGATCGGTTTGTGCGATTTTTCCGGGAAGCTTGGCCTTATTTTCGAGCACACCAAGGCAGTACCTTTCTTGTTTTAATTTCTGCTGAAATTCTCGACAGCCCTTATTTGGATCCCATTCTTATGGCAAGTTTCCACTTTCTTCTGTTTTTCCCCCAATTTGACATCTCTCTCCTTCATGGTTTGGGGATCAAATTTGTTCTTGCTCCAGGGACCCATGTGCAAATTGACAAGTTGCTAGCTGAGAGAGGAAAAGAGCCCAAGTATGTTGGACGATACAGAATTACAGATTCTGATTCTCTCCAGGCGGCCATGGATGCAGCTGGTAGAATTCGTATTATGATAGAGGCAAAGCTATCTCCTGGGCCCTCCTTATGTAATATACGTCGACATGGTGACAATAGTCGCTGGCATGATGGTGTCAGTGTTGTTAGCGGTAATTTTCTTGCAGCTAAGCGAAGAGGAGTTGTGGAAGGCATTGATTATGGTGCAACAGGTGAAGTAAAGAAAATAGACGTTTCACGTATTCGTGAAAGGCTTGACCAAGATTCTATAGTGATCTTAAGCAATCTTGGTTATTCCAGCTCCGGAGAAGTATTAAATTGCAACACATATGAAGTTGCTACAGCTTGTGCATTGGCTCTTGGGGCGGAGAAACTTATTTGCATTATAGATGGTCCAATTCTTGATGAATCTGGCCGTCTTATCCGCTTTTTGACTCTTCAAGATGCAGACATGTTGGTCCGCAAACGGGCTAAGCAAAGTGAAATAGCTGCTAATTATGTAAAAGCTGTTGATCAGGAAGATCATCCCAATTGGTTTGGCCACAGTGATTCCAACGGAATGGTCCCTTCACAAAATGGAAATTATTTAAGGGAGCGTTATAATGCAACATTCCAGAACGGTGTTGGTTTTGACAGCGGGAACGGGCTATGGGCTAGTGAAGAACAGGGCTTTGCAATTGGGGGTCTAGAGAGGCTGGGTCGACTAAACGGTTACCTTTCAGAATTGGCTGCTGCAGCTTTTGTGTGTAGAGGAGGTGTTCAAAGAGTTCATCTATTAGACGGCACAATTGCTGGAGTTTTATTGAAGGAGTTGTTTCAAAGAGATGGAGTTGGGACAATGGTGGCTAGTGATGTCTATGAAGGAACACGAATGGCTAAGGTAACAGATTTTGACGCAATAAGACAGATTATAAAACCTTTAGAGGAATCAGGCACATTGGTCAAGAGGACAGATGAAGAGCTACTTGAAGCATTGGATTCATTCATTGTTGTGGAGAGAGAGGGTCATGTTATTGCTTGTGCTGCTCTATTCCCTTTCTACAAAGACAAGTGCGGAGAGGTTGCTGCTATTGCTGTTTCTCCTGATTGCCGTGGACAAGGACAGGGTGACAAGTTGCTCGATTATATTGAAAAGAAGGCATCTTCTCTTGAACTGGAAATGCTTTTCCTGCTTACAACCCGCACGGCAGATTGGTTTGTGAGGCGGGGCTTCTCGGAGTGTTCGATAGATTCATTACCAGCTGAGAGAAGGAAAAAGATTAATCTATCACGCAAGTCTAAGTATTATACAAAGAAGCTGCTGCCTGACATGAGTGGAATTCTCTTTTGA

Network for GWHGAAZE023500

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.29	AA_kinase	273	379	2.40E-06
PF00583.26	Acetyltransf_1	551	619	1.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GNAT

KEGG pathway

KO	Enzyme	pathway	mapID
K14682	argAB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0006526	biological_process	arginine biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0008080	molecular_function	N-acetyltransferase activity
GO:0004042	molecular_function	acetyl-CoA:L-glutamate N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.699
	SRR3591706	second leaf	4.888
	SRR3591707	mature leaf	8.278
	SRR3591708	Shoot apex	9.826
	SRR3591709	Stem	15.407
	SRR3591710	White floral bud	8.382
	SRR3591711	White flower	13.806
	SRR3591712	Green floral bud	8.102
	SRR3591713	Yellow flower	17.499
SRP173429	SRR8316895	Juvenile bud stage	9.478
	SRR8316896	Juvenile bud stage	14.693
	SRR8316897	Juvenile bud stage	6.228
	SRR8316894	Third green stage	4.309
	SRR8316900	Third green stage	16.203
	SRR8316901	Third green stage	12.806
	SRR8316898	Complete white stage	4.892
	SRR8316899	Complete white stage	17.243
	SRR8316903	Complete white stage	9.654
	SRR8316902	Silver flowering stage	4.689
	SRR8316904	Silver flowering stage	7.406
	SRR8316905	Silver flowering stage	3.553
	SRR8316906	Gold flowering stage	16.057
	SRR8316907	Gold flowering stage	15.914
	SRR8316908	Gold flowering stage	15.095
SRP132670	SRR6706286	Control	14.479
	SRR6706287	Light intensity 50%	15.263
	SRR6706288	Light intensity 20%	15.219
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.060
	CNS0095593	Slightly white alabastrum(diploid) 2	10.690
	CNS0095594	Slightly white alabastrum(diploid) 3	13.834
	CNS0095595	Whole white alabastrum(diploid) 2	10.247
	CNS0095596	Whole white alabastrum(diploid) 3	12.245
	CNS0095597	Whole white alabastrum(diploid) 4	10.221
	CNS0095598	Silvery flower (diploied) 1	18.037
	CNS0095599	Silvery flower (diploied) 2	15.785
	CNS0095600	Silvery flower (diploied) 3	16.619
	CNS0095601	Golden flower (diploid) 1	18.405
	CNS0095602	Golden flower (diploid) 2	18.681
	CNS0095603	Golden flower (diploid) 3	20.124
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.780
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.941
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.262
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.978
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.010
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.639
	CNS0095610	Silvery flower (tetraploid) 1	22.114
	CNS0095611	Silvery flower (tetraploid) 2	27.274
	CNS0095612	Silvery flower (tetraploid) 3	25.555
	CNS0095613	Golden flower (tetraploid) 1	20.823
	CNS0095614	Golden flower (tetraploid) 2	22.947
	CNS0095615	Golden flower (tetraploid) 3	18.090
CRA001975	CRR073297	Stem 1	13.298
	CRR073298	Stem 2	10.867
	CRR073299	Stem 3	9.174
	CRR073300	Leaf 1	12.887
	CRR073301	Leaf 2	12.744
	CRR073302	Leaf 3	9.602
	CRR073303	Juvenile bud 1	14.330
	CRR073304	Juvenile bud 2	8.493
	CRR073305	Juvenile bud 3	12.145
	CRR073306	Third green 1	5.792
	CRR073307	Third green 2	4.652
	CRR073308	Third green 3	4.968
	CRR073309	Second white 1	9.478
	CRR073310	Second white 2	14.348
	CRR073311	Second white 3	14.134
	CRR073312	Silver flowering 1	9.891
	CRR073313	Silver flowering 2	9.007
	CRR073314	Silver flowering 3	6.408
	CRR073315	Gold flowering 1	5.034
	CRR073316	Gold flowering 2	5.340
	CRR073317	Gold flowering 3	4.687
	CRR073318	Tawny withering 1	5.281
	CRR073319	Tawny withering 2	3.596
	CRR073320	Tawny withering 3	3.701