Gene detail

Detail information of GWHGAAZE023544

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092593.1	0	PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 [Sesamum indicum]
COG	YP_005072047.1	2E-15	type II DNA modification methyltransferase
Swissprot	tr\|Q94F87\|CMT2_ARATH	0	DNA (cytosine-5)-methyltransferase CMT2
trEMBL	tr\|K4CI31\|K4CI31_SOLLC	0	Cytosine-specific methyltransferase {ECO:0000256\|RuleBase:RU000417}
TAIR10	AT4G19020.1	0	chromomethylase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	12997090	13016297	+
GWHAAZE00000007	mRNA	12997090	13016297	+
GWHAAZE00000007	exon	12997090	12998304	+
GWHAAZE00000007	exon	13001647	13001681	+
GWHAAZE00000007	exon	13001793	13001895	+
GWHAAZE00000007	exon	13002101	13002151	+
GWHAAZE00000007	exon	13002253	13002357	+
GWHAAZE00000007	exon	13002440	13002559	+
GWHAAZE00000007	exon	13002769	13002862	+
GWHAAZE00000007	exon	13004677	13004879	+
GWHAAZE00000007	exon	13005092	13005157	+
GWHAAZE00000007	exon	13005242	13005490	+
GWHAAZE00000007	exon	13011584	13011642	+
GWHAAZE00000007	exon	13011745	13011811	+
GWHAAZE00000007	exon	13012151	13012480	+
GWHAAZE00000007	exon	13013603	13013671	+
GWHAAZE00000007	exon	13016172	13016297	+
GWHAAZE00000007	CDS	12997090	12998304	+
GWHAAZE00000007	CDS	13001647	13001681	+
GWHAAZE00000007	CDS	13001793	13001895	+
GWHAAZE00000007	CDS	13002101	13002151	+
GWHAAZE00000007	CDS	13002253	13002357	+
GWHAAZE00000007	CDS	13002440	13002559	+
GWHAAZE00000007	CDS	13002769	13002862	+
GWHAAZE00000007	CDS	13004677	13004879	+
GWHAAZE00000007	CDS	13005092	13005157	+
GWHAAZE00000007	CDS	13005242	13005490	+
GWHAAZE00000007	CDS	13011584	13011642	+
GWHAAZE00000007	CDS	13011745	13011811	+
GWHAAZE00000007	CDS	13012151	13012480	+
GWHAAZE00000007	CDS	13013603	13013671	+
GWHAAZE00000007	CDS	13016172	13016297	+

Transcript Sequence
>GWHTAAZE023574 ATGGGAAAGCAGCGCCGAGCTTCCAAATCAACAGCTCTGTCGTTGCTGCGAGTGCTTGATAATGGTTCGGATATCGAAATTGACGACAATGCCGTGCCGCTGAAGGTGTTCAACCCTAATTTATCGGCGGAGAGTTGCCTGAGAAGGTCGCCGAGGAGCACGACGAACGTGTACAGAAGTAGTAAGGATACTGCATTGTCCCATTCTTTAACAGGAGAGTCATCGGCGAAACGGCAAGAGAAGAAGAGGCGTGGCGGATCTGTGGATGGAAAGGCTACTTGTTCGAAGAAGGTTAAGGTGAGTTCGAGAAATTCGAATGGTAAAATTTTAAACAATAAGTGTTTGAGAAGGTCTCCGAGGCTAATAAGTGGAGGAATTGAAGGCAAATGTGAATTATTATCATTGCCTGAACCACCTTCAGTAATAAGGAGGCAATCTTCATCGGATAAATTAACCATTAGCAAGAAGTGCTTGAGATCTCGAGTGATTCCGTTCGCAGTAGTTGAGGCTGCAAAATCTCCTTTATTAGTTCAAAATCAGGACAAGGATAAGAAGACGTCAACATTGAAGAACAAACAACTAGATTCTGATTTAATTGAGGGATCCAATTCGACAAAGAAGACATTGAGATCTCGAGTGATTCCATTTGCAGTAGCAGCGGTATGCAAAAATGCTGAAGTGGAATCTGGTTTAGTTCACACTTCACCGAAAAGTAACAATTTGCCTATTATGTCTAGTGAAAAATGTTTGAGATCTAGAAAGGTACAGTTTCGTCGTGTAATAGAGAAGGAGGCTCGAAAGGAGGTTAAAAGAGAGTGTAGTAGTAGTTTAAGTAAAAGACATCCTAATTCGGCCCATAAATGGCAACCACCGAAGGAGAATAGCTCGAAGGAGGAGAAGATGAATAAGAGTCTGTTGGGGAACGGTGATTTGCCTCTGTTAAGTGATGCGAAGTGCTTAAGATCTCGAAAGATAGAATTTTGTCGTGCAGTACTAGAGGCTGAACAGGTCGAAACAGATTGTAGTTTAATTGAATGGCCTCTTAATTCGGAGGAGAAACAGCCACAGGAGAAGAAGAGTAATAATAAGGCATCTGTTTCGTCGGAGAAGAAAGAGAGGAAGCAGAAGAAAAATGATGTAACACCATTCTTTATAGGCGAGCCTGTTCCTGATGATGAAGCTCGAGAAAGGTGGCGCTGGCGTTACGAATTAAAGAGTCAAAGACGTAAAGATCAAAGCTGGATACTAAATGCTGATGAAGAGGATGAAGTAATTTTGAATGTAGAATGTCATTATTCTCAAGCTCAAGTTGGCGGATGTATTATTAATCTTGGAGATTGTGCATATATAAAGAGTATTGCAAGTGTGGCAGTGTTTCATGGTGCAGTTTTGAATATTGTTGAGGGTAAAGGAAGACAAAAAGATATTGGGAGGATCATAGAATTTTTCAAAACAATGGACGGAGAAGATTACTTTAGAGTCCAGTGGTTTTATAGAGCTGAAGACACAGTTATGAAAGAAGCAGCTGTTATCCATGACAAGAAACGTATATTCTACTCTACTTTAATGAATGACAATTTATTAGATTGCATTGTTTCTAAAGTCAATGTAATAGAGATAGCACCGGTGCTAGCTTTGCAGCCCAGCTTGATTCCGCCATGTGACTTTTATTGTGATATGGAGTATTGTGTCGAGTATTCTACATTTCGCACCTTATTAGCTGGTAGTCCGTTAGAGAGAAGTGAGTTATCATTGCCTAGTTACCCTGACACTTACTGTCCGATCAATACAACTCCCTTGGAGGACTTCTTTAGTTGTGCGCCTTACAAAGCCGATTTGGCATTACTAGATCTTTACTCTGGTTGCGGTGGAATGTCAACTGGATTGTGTCTTGGTGCCAAACTTTCCGGCGTTAATCTTGTAACGAGATGGGCAATTGATTATCACAAGTCTGCATGCGACAGCTTGAAACTAAATCATCCAGAAACACAAGCTAGGCATACCACTGCTGAGGATTTTTTGGAACTGCTGAAGGAATGGGAAAAGCTATGCCAAAGGTATTTGGTTGATGATTACGAAAGAACACATAAATATAGATCGAAGGATAGAGGCAAACCAGAAAGCAAGGTAGATGCTCATTTTGATGTTAAGATGCCTCGTGGGGAGTATGAAGTCTCGTGCCTAGTTGATATTTGTTATGGTGATCCCAATGAATCAGGCGAGGAAGGGCTAAAATTTAAGGTGCGATGGAAGGGATATGATCAAAGTGAAGATACATGGGAGCCAATTGAAGGTTTGAGTAATTGCCAGGAACACATACGAGATTTTGTAATAAGTGGACGAAAATCTAAGATCTTGCCACTTCCTGGTGAGGTTGACGTTATTTGTGGTGGCCCTCCATGCCAAGGGATTAGTGGTTATAATCGGTATAGAAGCATTGGTTCCCCATTGAATGACGAGAGGAATCGTCAAATAATTGTTTTCATGGACATAGTGAAATTCTTAAAGCCGAATTATGTATTAATGGAAAATGTGGTTGACATCTTAAAGTTTGATAAGGCTTCTCTTGGGAGATACGCTTTAAGTCGTTTGGTTGATATGAAGTACCAAGCGAGGCTTGGAACTATGGCTGCTGGCTGTTATGGTCTTCCCCAATTTAGGTTGCGTGTTTTTCTGTGGGGCGCTCTTCCTACTGAGAAACTACCTCAATTTCCACTTCCTACTCATGATGTTGTTGTCAGATATTGGCCTCCAAATGAGTTTGAGCAAAATACTGTTGCTTACAATGAAGGCCAACCTCGGGATCTTGAAGAAGCCGTCGTGCTACGTGATGCCATCTCCGATCTTCCAGCTGTAATGACTTTGTTTCTTTTGATTGGTTTTCTACTCTGA

Network for GWHGAAZE023544

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.19	BAH	470	570	2.60E-10
PF00385.25	Chromo	737	776	2.80E-10
PF00145.18	DNA_methylase	784	924	7.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00558	DNMT1, dcm	Metabolic pathways	map01100
K00558	DNMT1, dcm	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0003682	molecular_function	chromatin binding
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.243
	SRR3591706	second leaf	3.079
	SRR3591707	mature leaf	0.216
	SRR3591708	Shoot apex	17.291
	SRR3591709	Stem	2.887
	SRR3591710	White floral bud	1.177
	SRR3591711	White flower	0.305
	SRR3591712	Green floral bud	5.030
	SRR3591713	Yellow flower	0.042
SRP173429	SRR8316895	Juvenile bud stage	3.812
	SRR8316896	Juvenile bud stage	4.780
	SRR8316897	Juvenile bud stage	2.722
	SRR8316894	Third green stage	2.393
	SRR8316900	Third green stage	6.573
	SRR8316901	Third green stage	4.570
	SRR8316898	Complete white stage	0.331
	SRR8316899	Complete white stage	5.271
	SRR8316903	Complete white stage	0.713
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.055
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.098
	SRR8316907	Gold flowering stage	0.076
	SRR8316908	Gold flowering stage	0.043
SRP132670	SRR6706286	Control	3.949
	SRR6706287	Light intensity 50%	4.137
	SRR6706288	Light intensity 20%	4.751
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.522
	CNS0095593	Slightly white alabastrum(diploid) 2	2.462
	CNS0095594	Slightly white alabastrum(diploid) 3	1.723
	CNS0095595	Whole white alabastrum(diploid) 2	2.049
	CNS0095596	Whole white alabastrum(diploid) 3	1.301
	CNS0095597	Whole white alabastrum(diploid) 4	1.388
	CNS0095598	Silvery flower (diploied) 1	1.759
	CNS0095599	Silvery flower (diploied) 2	1.673
	CNS0095600	Silvery flower (diploied) 3	0.593
	CNS0095601	Golden flower (diploid) 1	0.682
	CNS0095602	Golden flower (diploid) 2	0.416
	CNS0095603	Golden flower (diploid) 3	0.433
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.687
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.250
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.049
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.958
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.078
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.331
	CNS0095610	Silvery flower (tetraploid) 1	0.083
	CNS0095611	Silvery flower (tetraploid) 2	0.313
	CNS0095612	Silvery flower (tetraploid) 3	0.128
	CNS0095613	Golden flower (tetraploid) 1	0.036
	CNS0095614	Golden flower (tetraploid) 2	0.124
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	3.502
	CRR073298	Stem 2	4.506
	CRR073299	Stem 3	2.825
	CRR073300	Leaf 1	5.938
	CRR073301	Leaf 2	4.453
	CRR073302	Leaf 3	3.401
	CRR073303	Juvenile bud 1	3.131
	CRR073304	Juvenile bud 2	2.458
	CRR073305	Juvenile bud 3	3.375
	CRR073306	Third green 1	0.068
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.038
	CRR073309	Second white 1	0.094
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.025
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.269
	CRR073316	Gold flowering 2	0.103
	CRR073317	Gold flowering 3	0.229
	CRR073318	Tawny withering 1	2.405
	CRR073319	Tawny withering 2	1.826
	CRR073320	Tawny withering 3	2.610