Gene detail

Detail information of GWHGAAZE023573

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17827.1	0	unnamed protein product [Coffea canephora]
COG	YP_001660791.1	1E-14	apoptotic protease-activating factor 1 like
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|A0A068VB70\|A0A068VB70_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_181 {ECO:0000313\|EMBL:CDP17827.1}
TAIR10	AT3G14470.1	4E-175	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	14657682	14661671	+
GWHAAZE00000007	mRNA	14657682	14661671	+
GWHAAZE00000007	exon	14657682	14661671	+
GWHAAZE00000007	CDS	14657682	14661671	+

Transcript Sequence
>GWHTAAZE023603 ATGGCAGTAGTAGAAATCTTTGTCTCGGCATTTGTTACTCTTCTGATCGAGAAGTTAGCCTCTTTCCTGCTGTTGAAAATGGCTGGCCTCGAGGGAATTGAGGCTCAACTCAAGAAGTGGAGCGACACTTTTAAGACTATTCGAGCTGTGCTAAATGACGCCGAGGAGAAACAGATCACAGATGAAGATGTACAGATGTGGCTCGACGATCTCCAACATTTGGCTTACGATCTTGACGACATACTCGACGATTTGCTCACCAAAGCTTTGCATCGTGAAGCTGTGAAGGCAGCTCAAGAAGCTAGCACCAGTGAAGTAAGCCGCCTCATCCCTACTTTAACTACTTTTGCTAGTGATTTCCTGTATGATTACAACATGGGATCCAAGTTAGCGGATATCACTCAACGATTGCAAGATCTTTTGACCCGGAAAAAGGTTTTGGGGTTGACAAAGAATGCCATGGGGATCAAGTCATACGGAATCGGAGAAAGAGAAACCAGTTCCTTGGTGAATGAATCGGTTGTTTACGGCCGTGAAAATGATAAAAAGGAAGTAATCAAGTTGTTGTTGAGAACCGAAACACGTGCTGGTGAAGTCTCTGTAATTCCTATAGTTGGTATGGGCGGTGTCGGGAAAACCACTCTTGCTCAACTTGTTTACAATGATGATGAAGTACAGAGCCAGTTTGATCTCAAGATATGGGTATGTGTTTCTGATGAATTTGATGTCTTCCTGATAACCAAGCGAATTCTTGGGGCTAAGGCCTTGGACTTAAACAAGGCTCAAGAGAAACTAAAGAAGAAACTTTCCAACAGAAAATTTCTTCTTGTTTTAGACGACGTATGGAACGAAGACTACGGAAAATGGGATCAACTCCGTACTCCTTTTCTGGCTGGGGCACCTGGCAGTGTAGTTATTGTCACAACTCGGAACGAGAAGGTGGCGTCAACAATGGGCAAGGTTCGAGGCAATGATCAAATTTATCGTCTAGATAAGCTTTCAGATGATATTTGCCTATCTATATTAGCTCGACATGCATTATCTACAAGAGATTTTGAAGAGAATCCCAACTTTAAAATCGTCGCCGAGAAACTTACCAGAAAGTGTAAAGGCTTACCCTTGGCAGCAAAGGCGATTGGAGGCCTCTTGCGCACAAGTAGAACACCAAATGAGTGGGAAGATATATTAAACAGCAAGATTTGGGAATTGCCAGAACAATCGACTGGCATTCTTCCGGCTTTGAGATTAAGCTATCGTCATCTACCTCCTCATCTAAAGCGTTTGTTTGCGTATTGCTCTATATTTCCGGCGGACTATATCTTTGACAAATACGAGCTAGTTTTGTTATGGATGGCAGAAGGCTTTTTGCAGCAGTCAGAAGGAAAGAAGAGAATGGAAGAGATGGGTTTTCTATATTTCAATGAGCTTGTATCGCGGTCCTTTTTTCAACCTTTAAGCGGCAGCGAGGAATCGCTGTTTGTGATGCATGACCTAATGAATGACCTAGCTCAGTTTGTTGCCAAAGGAATATGCTATAGGGTGGAAGATGAAATGAAGTTCAATGGACAACATATTGGTTTTGAAAAGGTTCGCCACTCATCATACATTCGCCAGAAATACGGTGTCTTTAATAAATTCGAGAACTATCGCAAACTTCTTAGTTTGCGGACTTTCTTACCTCTATTGGTTCATAAAGTGGAAAATTGGCAGAAGTTCTACTTGAGCAGTAGGGTTGTTAATGAGTTGTTACCTGAACTCTGGTGCTTACGGGTTTTGTCTTTGAGTGGTTATTCCATAACTGAGCTTTCAAACTCAATTGGTGAGTTGAAACACCTTCGGTATCTTAACTTATCCCAGACCCTCATCACACATTTGCCCGAGTCCGTGAGTGATCTCTACAATTTACAGACGTTATCATTACGTAATTGCAGCGAACTACTCAAGTTACCGACAAGAATTGGAGGCTTAGTTAATTTGCGGCATCTTGACATTGGCAAAACTAAAAAATTATTAAAAATGCCTTCTTGGATTGGTAAGTTAACTAGTTTGCAAACATTGTCAAAGATTATTCTAGATGAGAATCATACTTTGGCAGTAAATGAGTTGAGGGGATTATCTGATCTCCAGGGAACACTTGCCATTATTGGGTTACACAATGTGATGAATGTTGAAGATGCAAGGGAGGCCAATCTTTTGTCTAAGCAAGGCCTCAAGGACTTGACATTGACCTGGAGCAGCGATTTTGATGATTCTCAAAGAATGGAGACTCGAGAGTATGAAGTGCTTGAATTTCTAAAACCTTATACAAAATTGACAAAGTTGAAAATCGAGTTCTATGGGGGCATTGAATTTCCTAGTTGGGTATGTGATCCTTCATTCGTTGATATAACAAATCTAACCTTCAGTGGGTGTGAAAGGGTTGCATCCTTACCATCACTTGGGCATCTACCCTCACTCAAGGAGTTGTTCATCCAAGGCATGGCTGGCGTGAAAAATGTGGGTGACGAGTTGTACGGAGTTGGTCAGGTGGTTGCATTCCAGTCAATTGAAACTCTCAAGTTTGAGAACATGGTGGGTTGGGAGGAATGGTCTTTCAATTTGGCCAATATTAATAACTGTGTTGGTGCGTTTCCTCGACTTCACAACCTTACGATACGTGATTGTCCTGTATTGGTCAAGATTTCACTTCCCAGTCTTCCGTCTCTTCGGGTTTTAGATATAAGAAGATGTGATGAGGTTGTTCTTAGTGGTATAGTTAGTGTCGCATCTCTTACTACCATAACGATGGAAGGGATCCTTGGGCTTTCGAAGCTGCACGAAGGGGTTGTACGATCTCTGGGAGAACTTCAATATCTTCGAATTCTAAATTGTGATGAGCTGCGGTATTTGTGGGAAGAAGAAGAATCCTCGTGTTACAAGCTCGGAAATCTGGTTGATCTATGTTTTGGAGGGTGTCTTAAGCTTGAGAAGTTGCCAGATCTTGGGAGTTGCCTCACGTCTCTCAAGAAATTAGACATCCAACATTGCCCGAGACTGCAGTCCTTGCAAACAACGAAAAATTTGCCAAGGAAAGAAAAAGAGTTGATCGAAAGCAATAGCAACAATCATGTGGAAAGTTGTTCTCATCTTGAAAGTTTATCTATTTGGGGTTGTGAATCTTTGACATGCTTTCTACCATGTCATAATCAACCCACCACCCTCAAATATCTTTCCGTTTATTCTTGCAGTAATTTGGAGCCAGATTCAGAGAACTTTTGGTTACTCAACAGTAGTAGTAAGCCATCATCATTTGAAACAATTCATATCTGCAATTGGGTGAAGCTGGCATCCTTACCTCGTTGCTTGTTCAAATTCATTCACCTTACCAATTTATCGTTAAATGGCTGTCCGGGTCTCGAGTCATTTCCAGAAAGAGGTTTGCCTCCCAACTTGAGAATACTTACTATAATGAAGTGCGAGAATCTGAAATATTTGCCTGATGATCAGATGCAAAGCCTCACGTCTCTGGGAAGTATTGAATTATCGGGCTGTCCATGTCTCGAATCCTTTCCTCAAGGGCATTGGCCTCCCAACCTAGAATCACTTCGGATCGGGAACATAAAGAAGCAGCCCATCTCAAAGTGGAGCCTACATAGTCTCCCAACCTCTCTTGCTTATTTGAAAATTGACGGCGATATTCCAGGGCTGATGTCATTTTCGGGTGCGGGTATTAAACTTCCAACAACTCTAACCACACTTACTATCAATAATCTCCAGAGTATTGAATCCCTCTCCATGGGCCTCGAGAACCTCACCTCGCTTCAAAACCTCTGCATATTTAAATGTCCTAAGCTTCAATCTTTGCCAGATACGTTGCTTCCAGCACTTTCAAGTCTTAAAATCCGGACGTGCCCACTCGTAAAAGAACGGTGTTTAAAGGAGAAAAGAGATTATTGGCCCAAAATATCCCACATCCCTTGTGTGTGGATAGACAGCAAATTAATCCAGTAG

Network for GWHGAAZE023573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0247

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18052.2	Rx_N	11	99	8.50E-24
PF00931.23	NB-ARC	179	397	3.60E-46
PF13855.7	LRR_8	589	643	1.10E-06

Protein Sequence

>GWHPAAZE023589
MAVVEIFVSAFVTLLIEKLASFLLLKMAGLEGIEAQLKKWSDTFKTIRAVLNDAEEKQITDEDVQMWLDDLQHLAYDLDDILDDLLTKALHREAVKAAQEASTSEVSRLIPTLTTFASDFLYDYNMGSKLADITQRLQDLLTRKKVLGLTKNAMGIKSYGIGERETSSLVNESVVYGRENDKKEVIKLLLRTETRAGEVSVIPIVGMGGVGKTTLAQLVYNDDEVQSQFDLKIWVCVSDEFDVFLITKRILGAKALDLNKAQEKLKKKLSNRKFLLVLDDVWNEDYGKWDQLRTPFLAGAPGSVVIVTTRNEKVASTMGKVRGNDQIYRLDKLSDDICLSILARHALSTRDFEENPNFKIVAEKLTRKCKGLPLAAKAIGGLLRTSRTPNEWEDILNSKIWELPEQSTGILPALRLSYRHLPPHLKRLFAYCSIFPADYIFDKYELVLLWMAEGFLQQSEGKKRMEEMGFLYFNELVSRSFFQPLSGSEESLFVMHDLMNDLAQFVAKGICYRVEDEMKFNGQHIGFEKVRHSSYIRQKYGVFNKFENYRKLLSLRTFLPLLVHKVENWQKFYLSSRVVNELLPELWCLRVLSLSGYSITELSNSIGELKHLRYLNLSQTLITHLPESVSDLYNLQTLSLRNCSELLKLPTRIGGLVNLRHLDIGKTKKLLKMPSWIGKLTSLQTLSKIILDENHTLAVNELRGLSDLQGTLAIIGLHNVMNVEDAREANLLSKQGLKDLTLTWSSDFDDSQRMETREYEVLEFLKPYTKLTKLKIEFYGGIEFPSWVCDPSFVDITNLTFSGCERVASLPSLGHLPSLKELFIQGMAGVKNVGDELYGVGQVVAFQSIETLKFENMVGWEEWSFNLANINNCVGAFPRLHNLTIRDCPVLVKISLPSLPSLRVLDIRRCDEVVLSGIVSVASLTTITMEGILGLSKLHEGVVRSLGELQYLRILNCDELRYLWEEEESSCYKLGNLVDLCFGGCLKLEKLPDLGSCLTSLKKLDIQHCPRLQSLQTTKNLPRKEKELIESNSNNHVESCSHLESLSIWGCESLTCFLPCHNQPTTLKYLSVYSCSNLEPDSENFWLLNSSSKPSSFETIHICNWVKLASLPRCLFKFIHLTNLSLNGCPGLESFPERGLPPNLRILTIMKCENLKYLPDDQMQSLTSLGSIELSGCPCLESFPQGHWPPNLESLRIGNIKKQPISKWSLHSLPTSLAYLKIDGDIPGLMSFSGAGIKLPTTLTTLTINNLQSIESLSMGLENLTSLQNLCIFKCPKLQSLPDTLLPALSSLKIRTCPLVKERCLKEKRDYWPKISHIPCVWIDSKLIQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.528
	SRR3591706	second leaf	2.086
	SRR3591707	mature leaf	2.503
	SRR3591708	Shoot apex	3.371
	SRR3591709	Stem	3.611
	SRR3591710	White floral bud	1.831
	SRR3591711	White flower	2.143
	SRR3591712	Green floral bud	1.577
	SRR3591713	Yellow flower	1.175
SRP173429	SRR8316895	Juvenile bud stage	0.695
	SRR8316896	Juvenile bud stage	0.423
	SRR8316897	Juvenile bud stage	0.380
	SRR8316894	Third green stage	0.347
	SRR8316900	Third green stage	0.764
	SRR8316901	Third green stage	0.788
	SRR8316898	Complete white stage	0.356
	SRR8316899	Complete white stage	1.544
	SRR8316903	Complete white stage	1.143
	SRR8316902	Silver flowering stage	0.222
	SRR8316904	Silver flowering stage	0.310
	SRR8316905	Silver flowering stage	0.215
	SRR8316906	Gold flowering stage	0.579
	SRR8316907	Gold flowering stage	0.526
	SRR8316908	Gold flowering stage	0.370
SRP132670	SRR6706286	Control	0.448
	SRR6706287	Light intensity 50%	0.375
	SRR6706288	Light intensity 20%	0.433
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.406
	CNS0095593	Slightly white alabastrum(diploid) 2	0.385
	CNS0095594	Slightly white alabastrum(diploid) 3	0.043
	CNS0095595	Whole white alabastrum(diploid) 2	0.152
	CNS0095596	Whole white alabastrum(diploid) 3	0.198
	CNS0095597	Whole white alabastrum(diploid) 4	0.298
	CNS0095598	Silvery flower (diploied) 1	0.368
	CNS0095599	Silvery flower (diploied) 2	0.789
	CNS0095600	Silvery flower (diploied) 3	0.554
	CNS0095601	Golden flower (diploid) 1	0.563
	CNS0095602	Golden flower (diploid) 2	0.571
	CNS0095603	Golden flower (diploid) 3	0.624
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.243
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.197
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.376
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.064
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.325
	CNS0095610	Silvery flower (tetraploid) 1	0.662
	CNS0095611	Silvery flower (tetraploid) 2	0.935
	CNS0095612	Silvery flower (tetraploid) 3	0.544
	CNS0095613	Golden flower (tetraploid) 1	0.351
	CNS0095614	Golden flower (tetraploid) 2	0.364
	CNS0095615	Golden flower (tetraploid) 3	0.345
CRA001975	CRR073297	Stem 1	1.439
	CRR073298	Stem 2	1.371
	CRR073299	Stem 3	0.439
	CRR073300	Leaf 1	1.295
	CRR073301	Leaf 2	1.052
	CRR073302	Leaf 3	0.486
	CRR073303	Juvenile bud 1	0.891
	CRR073304	Juvenile bud 2	0.359
	CRR073305	Juvenile bud 3	0.897
	CRR073306	Third green 1	0.052
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.044
	CRR073309	Second white 1	0.055
	CRR073310	Second white 2	0.026
	CRR073311	Second white 3	0.026
	CRR073312	Silver flowering 1	0.012
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.037
	CRR073315	Gold flowering 1	0.808
	CRR073316	Gold flowering 2	1.249
	CRR073317	Gold flowering 3	0.901
	CRR073318	Tawny withering 1	0.775
	CRR073319	Tawny withering 2	0.628
	CRR073320	Tawny withering 3	0.246